diff --git a/conf/eddie.config b/conf/eddie.config index 70e0dcc..7f7e2e2 100644 --- a/conf/eddie.config +++ b/conf/eddie.config @@ -31,7 +31,7 @@ process { params { saveReference = true // iGenomes reference base - igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes' + igenomes_base = '/exports/igmm/eddie/BioinformaticsResources/igenomes' max_memory = 384.GB max_cpus = 32 max_time = 240.h @@ -42,8 +42,8 @@ env { } singularity { - envWhitelist = "SINGULARITY_TMPDIR" - runOptions = '-p' + envWhitelist = "SINGULARITY_TMPDIR,TMPDIR" + runOptions = '-p -B "$TMPDIR"' enabled = true autoMounts = true }