From f6578f727d1038c1f59209607b6fff5d4a67437f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=C3=98yvind=20Almelid?= <oyvind.almelid@igmm.ed.ac.uk>
Date: Tue, 25 May 2021 09:54:08 +0100
Subject: [PATCH] Add TMPDIR and mount for it to singularity configuration

---
 conf/eddie.config | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/conf/eddie.config b/conf/eddie.config
index 70e0dcc..7f7e2e2 100644
--- a/conf/eddie.config
+++ b/conf/eddie.config
@@ -31,7 +31,7 @@ process {
 params {
   saveReference = true
   // iGenomes reference base
-  igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes'
+  igenomes_base = '/exports/igmm/eddie/BioinformaticsResources/igenomes'
   max_memory = 384.GB
   max_cpus = 32
   max_time = 240.h
@@ -42,8 +42,8 @@ env {
 }
 
 singularity {
-  envWhitelist = "SINGULARITY_TMPDIR"
-  runOptions = '-p'
+  envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
+  runOptions = '-p -B "$TMPDIR"'
   enabled = true
   autoMounts = true
 }