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Move cluster options creating closure out of process scope
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commit
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1 changed files with 19 additions and 18 deletions
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@ -11,25 +11,26 @@ singularity {
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def hostname = "sinfo --local -N -h | head -1 | cut -f1 -d' ' ".execute().text.trim()
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// closure to create a suitable clusterOptions
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def clusterOptionsCreator = { m ->
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String base = "-A $params.project ${params.clusterOptions ?: ''}"
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// Do not use -p node on irma or if a thin node/core is enough
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if (m < 125.GB || hostname ==~ "i.*") {
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return base
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}
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if (m < 250.GB) {
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return base + " -p node -C mem256GB "
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}
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// Remaining cases use the largest available node (1 Tbyte for rackham, 512 Gbyte for others)
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if (hostname ==~ "r.*") {
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return base + " -p node -C mem1TB "
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}
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return base + " -p node -C mem512GB "
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}
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process {
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// closure to create a suitable clusterOptions
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def clusterOptionsCreator = { m ->
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String base = "-A $params.project ${params.clusterOptions ?: ''}"
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// Do not use -p node on irma or if a thin node/core is enough
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if (m < 125.GB || hostname ==~ "i.*") {
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return base
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}
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if (m < 250.GB) {
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return base + " -p node -C mem256GB "
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}
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// Remaining cases use the largest available node (1 Tbyte for rackham, 512 Gbyte for others)
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if (hostname ==~ "r.*") {
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return base + " -p node -C mem1TB "
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}
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return base + " -p node -C mem512GB "
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}
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executor = 'slurm'
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clusterOptions = { clusterOptionsCreator(task.memory) }
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}
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