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Move cluster options creating closure out of process scope

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This commit is contained in:
Pontus Freyhult 2021-04-08 09:45:29 +02:00
parent 4d64db85eb
commit fa1b4cb412
1 changed files with 19 additions and 18 deletions
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5
conf/uppmax.config
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@ -11,7 +11,6 @@ singularity {
def hostname = "sinfo --local -N -h | head -1 | cut -f1 -d' ' ".execute().text.trim()
process {
// closure to create a suitable clusterOptions
def clusterOptionsCreator = { m ->
String base = "-A $params.project ${params.clusterOptions ?: ''}"
@ -19,9 +18,11 @@ process {
if (m < 125.GB || hostname ==~ "i.*") {
return base
}
if (m < 250.GB) {
return base + " -p node -C mem256GB "
}
// Remaining cases use the largest available node (1 Tbyte for rackham, 512 Gbyte for others)
if (hostname ==~ "r.*") {
return base + " -p node -C mem1TB "
@ -29,7 +30,7 @@ process {
return base + " -p node -C mem512GB "
}
process {
executor = 'slurm'
clusterOptions = { clusterOptionsCreator(task.memory) }
}