From fbe7bd133ab06a7d0ce0ecc28be4688586e8aaea Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Fri, 25 Sep 2020 08:33:53 +0200 Subject: [PATCH] update uppmax specific sarek config --- conf/pipeline/sarek/uppmax.config | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/conf/pipeline/sarek/uppmax.config b/conf/pipeline/sarek/uppmax.config index df2f3a2..c5aa2b0 100644 --- a/conf/pipeline/sarek/uppmax.config +++ b/conf/pipeline/sarek/uppmax.config @@ -4,18 +4,18 @@ params { config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs' - singleCPUmem = 7000.MB + single_cpu_mem = 7000.MB // Just useful until iGenomes is updated on UPPMAX - igenomeIgnore = true + igenomes_ignore = true genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' } def hostname = "hostname".execute().text.trim() if (hostname ==~ "r.*") { - params.singleCPUmem = 6400.MB + params.single_cpu_mem = 6400.MB } if (hostname ==~ "i.*") { - params.singleCPUmem = 15.GB + params.single_cpu_mem = 15.GB }