diff --git a/conf/computerome.config b/conf/computerome.config new file mode 100644 index 0000000..1085b49 --- /dev/null +++ b/conf/computerome.config @@ -0,0 +1,26 @@ +singularityDir = "/gpfs/scratch/${USER}/singularity_images_nextflow" + +//Profile config names for nf-core/configs +params { + config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.' + config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)' + config_profile_url = 'https://www.computerome.dk/' +} + +singularity { + enabled = true + autoMounts = true + cacheDir = singularityDir +} + +process { + beforeScript = 'module load singularity squashfs-tools' + executor = 'pbs' + queue = { task.memory >= 192.GB ? 'fatnode': 'thinnode'} +} + +params { + max_memory = 1500.GB + max_cpus = 40 + max_time = 168.h +}