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Update imperial.config
Multiple process level updates reflecting the latest job sizing guidelines for the Imperial HPC
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1 changed files with 50 additions and 21 deletions
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@ -1,37 +1,66 @@
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//Profile config names for nf-core/configs
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params {
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// Config Params
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config_profile_description = 'Imperial College London - HPC Profile -- provided by nf-core/configs.'
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config_profile_contact = 'NA'
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config_profile_url = 'https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/'
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// Config Params
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config_profile_description = 'Imperial College London - HPC Profile -- provided by nf-core/configs.'
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config_profile_url = 'https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/'
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// Resources
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max_memory = 256.GB
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max_cpus = 32
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max_time = 72.h
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// Resources
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max_memory = 480.GB
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max_cpus = 40
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max_time = 1000.h
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}
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executor {
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$pbspro {
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queueSize = 50
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}
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$pbspro {
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queueSize = 50
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}
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$local {
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cpus = 2
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queueSize = 1
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memory = '32 GB'
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}
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$local {
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cpus = 2
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queueSize = 1
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memory = '6 GB'
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}
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}
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singularity {
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enabled = true
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autoMounts = true
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runOptions = "-B /rds/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
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enabled = true
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autoMounts = true
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runOptions = "-B /rds/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
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}
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process {
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executor = 'pbspro'
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executor = 'pbspro'
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// Process-specific resource requirements
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withLabel:process_low {
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// TARGET QUEUE: throughput
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cpus = { check_max( 2 * task.attempt, 'cpus' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 4.h * task.attempt, 'time' ) }
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}
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withLabel:process_medium {
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// TARGET QUEUE: throughput
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cpus = { check_max( 8, 'cpus' ) }
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memory = { check_max( 32.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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withLabel:process_high {
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// TARGET QUEUE: general
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cpus = { check_max( 32, 'cpus' ) }
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memory = { check_max( 62.GB * task.attempt, 'memory' ) }
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time = { check_max( 16.h * task.attempt, 'time' ) }
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}
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withLabel:process_long {
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// TARGET QUEUE: long
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cpus = { check_max( 8, 'cpus' ) }
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memory = { check_max( 96.GB, 'memory' ) }
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time = { check_max( 72.h * task.attempt, 'time' ) }
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}
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withLabel:process_high_memory {
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// TARGET QUEUE: large memory
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cpus = { check_max( 10 * task.attempt, 'cpus' ) }
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memory = { check_max( 120.GB * task.attempt, 'memory' ) }
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time = { check_max( 12.h * task.attempt, 'time' ) }
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}
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}
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