diff --git a/conf/pipeline/ampliseq/uppmax.config b/conf/pipeline/ampliseq/uppmax.config index b6cfea2..2a8bc34 100644 --- a/conf/pipeline/ampliseq/uppmax.config +++ b/conf/pipeline/ampliseq/uppmax.config @@ -6,12 +6,6 @@ params { } process { - //"make_classifier" is the older version (just one step) of preparing the database for classification - withName: make_classifier { - clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" } - } - - //"classifier_extract_seq" and "classifier_train" is the newer version, where database preparation is split in two to optimise resources withName: classifier_extract_seq { clusterOptions = { "-A $params.project -p core -n 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" } }