From dcba537d15673112d95a7797cbf252c0a03b1589 Mon Sep 17 00:00:00 2001
From: Mei Wu <25568561+projectoriented@users.noreply.github.com>
Date: Mon, 21 Feb 2022 16:19:17 +0100
Subject: [PATCH] picard md is single threaded

---
 conf/pipeline/raredisease/hasta.config | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/conf/pipeline/raredisease/hasta.config b/conf/pipeline/raredisease/hasta.config
index 2c6ed48..96e3332 100644
--- a/conf/pipeline/raredisease/hasta.config
+++ b/conf/pipeline/raredisease/hasta.config
@@ -1,8 +1,7 @@
 process {
     
     withName:'PICARD_MARKDUPLICATES' {
-        cpus   = { check_max( 13      * task.attempt, 'cpus' ) }
-        memory = { check_max( 130.GB  * task.attempt, 'memory' ) }
+        memory = { check_max( 90.GB  * task.attempt, 'memory' ) }
     }
     withName:'DEEPVARIANT' {
         cpus   = { check_max( 16      * task.attempt, 'cpus' ) }