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Author	SHA1	Message	Date
Gwenna Breton	2740b5efbf	Update docs/medair.md ... Fixed typo Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>	2022-08-08 16:08:05 +02:00
Gwenna Breton	648025c1ce	Clarified where to store singularity images	2022-08-08 16:04:21 +02:00
Gwenna Breton	6aa78833c3	Merge branch 'master' into medair	2022-08-01 16:46:55 +02:00
James A. Fellows Yates	0b47849532	Update mpcdf.config	2022-07-27 14:23:29 +02:00
Alexander Peltzer	36487c8c25	Merge pull request #399 from nf-core/sanger ... Sanger	2022-07-20 16:51:46 +02:00
Matthieu Muffato	dda1d810b1	Latest stable version (rather than an edge one)	2022-07-20 14:35:39 +01:00
Matthieu Muffato	1ee20f0bb0	2 cores should be enough for the nextflow manager itself	2022-07-20 14:35:22 +01:00
Matthieu Muffato	60dc451569	The oversubscribed queue is recommended for workflow managers	2022-07-20 14:34:59 +01:00
Matthieu Muffato	1f1a9ac5f0	ISG provide the module, not the pathogen informatics team	2022-07-20 14:34:25 +01:00
Matthieu Muffato	2aad355fbf	The config doesn't mandate Singularity any more (Conda is fine too)	2022-07-20 14:32:43 +01:00
Priyanka Surana	fd87fbcb9d	Sanger profile update	2022-07-20 13:22:51 +01:00
Priyanka Surana	58508c4fbc	Sanger profile update	2022-07-20 13:14:42 +01:00
Maxime U. Garcia	a02bd46617	Merge pull request #398 from nvnieuwk/lower-submission-rate-for-vsc_ugent ... lower submission rate for vsc_ugent	2022-07-14 16:03:46 +02:00
Nicolas Vannieuwkerke	f40825ac14	lower submission rate for vsc_ugent	2022-07-14 15:50:50 +02:00
Alexander Peltzer	c6d59bf633	Merge pull request #396 from drpatelh/nextclade ... Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-12 10:19:15 +02:00
Harshil Patel	2ab126fa4d	Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-11 18:28:41 +01:00
Gwenna Breton	6b9cdc8ef3	Added info about Sentieon singularities	2022-07-07 14:24:15 +02:00
Gwenna Breton	4538e8aa36	Update medair.config ... - added path to singularity image for Sentieon - harmonized alignment	2022-07-07 13:41:42 +02:00
Gwenna Breton	746db14d47	Update medair.md ... - updated text about storing singularity images - updated text about using profiles	2022-07-07 11:42:46 +02:00
Gwennid	b6e2d03a02	Added Singularity cache dir	2022-07-06 13:59:35 +02:00
Gwennid	96fd2bf217	Fixed formatting	2022-07-06 11:42:05 +02:00
Gwenna Breton	1d13dd9fbc	Changed where cgg-it is mentioned	2022-07-06 11:24:03 +02:00
Gwenna Breton	235097e58e	Addressed review comments ... - removed mention of iGenomes - clarified whom to contact for support	2022-07-06 11:20:59 +02:00
Gwenna Breton	1d7a34b11f	Removed comment about internal doc	2022-07-06 11:17:58 +02:00
Gwenna Breton	b202ad70ac	Removed mention of specific module versions	2022-07-06 11:16:38 +02:00
James A. Fellows Yates	08435ca300	Merge pull request #382 from jfy133/eva-java-correction ... EAGER @ EVA Further Java workarounds	2022-07-04 13:42:13 +02:00
James A. Fellows Yates	a141ff626b	Merge branch 'master' into eva-java-correction	2022-07-04 13:35:50 +02:00
Gwenna Breton	b3a6e199ca	Merge branch 'nf-core:master' into medair	2022-07-01 17:02:56 +02:00
Maxime U. Garcia	49e779e337	Merge pull request #394 from nvnieuwk/vsc-ugent-fix ... Vsc ugent fix for job-intensive pipelines	2022-07-01 16:26:41 +02:00
Nicolas Vannieuwkerke	8a74c517d4	Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix	2022-07-01 16:16:22 +02:00
Nicolas Vannieuwkerke	1e34595280	removed queue size limit	2022-07-01 16:16:18 +02:00
nvnieuwk	5ff845cde7	Merge branch 'master' into vsc-ugent-fix	2022-07-01 16:10:45 +02:00
Nicolas Vannieuwkerke	fa949a069e	added queuesize	2022-07-01 16:01:19 +02:00
Nicolas Vannieuwkerke	abfa3f47f4	lowered the job submit rate of vsc_ugent	2022-07-01 15:55:44 +02:00
Gwenna Breton	84174043e4	Added details for nf-core pipelines download	2022-06-30 16:41:50 +02:00
Gwenna Breton	2398110ea5	Added info on dowloading pipelines	2022-06-30 14:24:17 +02:00
Gwenna Breton	22f73b06f9	Updated info about the different profiles	2022-06-30 12:00:05 +02:00
Gwenna Breton	77dba3256a	Add profile name to test scope	2022-06-30 11:53:02 +02:00
Gwenna Breton	abccece8a3	Added medair config file to the list	2022-06-30 11:49:47 +02:00
Gwenna Breton	77017e877a	Added medair configuration docs to the list	2022-06-30 11:48:34 +02:00
Gwenna Breton	f718025e79	Added doc file for medair	2022-06-30 11:43:04 +02:00
Gwenna Breton	bb35d8e5d1	Added conf file for medair	2022-06-30 11:42:36 +02:00
Maxime U. Garcia	23669d2df6	Merge pull request #393 from Sage-Bionetworks-Workflows/bgrande/sage-sarek-config ... Include `check_max()` definition for Sage configuration	2022-06-23 21:47:17 +02:00
Bruno Grande	6f0d9e6c43	Complete check_max() move to global config	2022-06-23 10:10:28 -07:00
Bruno Grande	a19d79f6ff	Move check_max() to global config	2022-06-23 09:44:16 -07:00
Bruno Grande	1c7230cb08	Add Sage-specific Sarek config	2022-06-23 09:15:42 -07:00
Phil Ewels	1730751d97	Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config ... [WIP] Add custom configuration for Sage Bionetworks	2022-06-23 11:34:40 +02:00
Bruno Grande	37121faf4a	Fix typoe with label name	2022-06-22 14:37:43 -07:00
Bruno Grande	ecd898584d	Handle Sarek-specific max labels	2022-06-22 13:54:13 -07:00
Bruno Grande	c7093dee13	Reduce max_memory to fit on an instance	2022-06-16 12:37:32 -07:00