1681 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Alexander Peltzer	d510cb254e	Merge pull request #165 from ewels/fix-show-profiles ... Set params.custom_config_base in nextflow.config	2022-03-15 17:13:24 +01:00
Praveen Raj S	5828a48ef7	Merge pull request #351 from nf-core/praveenraj2018-patch-1 ... Adjusted time and maxforks for Mutect2	2022-03-15 17:00:09 +01:00
Praveen Raj S	a844335942	Update conf/munin.config ... Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-03-15 16:59:06 +01:00
Praveen Raj S	cb96c4bd2d	Update conf/munin.config ... Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-03-15 16:56:11 +01:00
Praveen Raj S	13c66f7e98	Update conf/munin.config ... Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-03-15 16:56:03 +01:00
Praveen Raj S	50c4610345	Adjusted time and maxforks for Mutect2	2022-03-15 16:29:19 +01:00
Alexander Peltzer	3e4fae71a4	Merge branch 'master' into fix-show-profiles	2022-03-15 14:52:29 +01:00
James A. Fellows Yates	47bb41a1d8	Merge pull request #348 from jfy133/eva-update ... Update eager @ eva to exclude slow nodes for mapping	2022-03-15 07:54:52 +01:00
James A. Fellows Yates	1b5037ce5e	Update eva.config	2022-03-15 07:49:06 +01:00
James A. Fellows Yates	1565b2ce63	Update eva.config	2022-03-15 07:42:23 +01:00
James A. Fellows Yates	f725b6c431	Apply suggestions from code review	2022-03-15 07:36:34 +01:00
Nathan S. Watson-Haigh	a0f5ac7445	Added references subdir to igenomes_base	2022-03-15 11:41:51 +10:30
James A. Fellows Yates	4670f8bf0c	Update eva.config	2022-03-14 14:56:01 +01:00
James A. Fellows Yates	a2e2e94333	Merge pull request #344 from njspix/vai ... Add VAI configuration	2022-03-14 14:36:00 +01:00
James A. Fellows Yates	a154738c5e	Merge pull request #347 from nf-core/pr-template-update ... Update PULL_REQUEST_TEMPLATE.md	2022-03-14 10:11:21 +01:00
James A. Fellows Yates	b7909c33c8	Update PULL_REQUEST_TEMPLATE.md	2022-03-14 08:27:10 +01:00
James A. Fellows Yates	30d9f82c65	Merge pull request #138 from Emiller88/pr-templates ... chore: add new config PR template	2022-03-14 08:06:09 +01:00
Nathan Watson-Haigh	cc55026751	Add singularity to PATH	2022-03-13 07:39:31 +10:30
Nathan Watson-Haigh	2f0b022571	Fixed typos	2022-03-13 00:08:42 +10:30
Nathan Watson-Haigh	dba3fb4c1d	Added SAHMRI HPC profile docs	2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh	b58a9952be	Added SAHMRI HPC profile	2022-03-12 21:24:05 +10:30
Nathan Watson-Haigh	b638694bd0	Added SAHMRI HPC profile	2022-03-12 21:17:33 +10:30
Matiss	6c79c75eec	Merge pull request #290 from maxozo/master ... added leicester profile	2022-03-11 09:21:09 +00:00
Nathan Spix	d067f61329	remove extra spaces	2022-03-07 15:22:18 -05:00
Spix	17c77ad516	update singularity command	2022-03-07 15:13:26 -05:00
Spix	c97c48ae5b	update singularity command	2022-03-07 15:11:45 -05:00
Spix	429c7b4fa8	initial commit	2022-03-07 15:01:46 -05:00
Alexander Peltzer	d0d86bfb2a	Merge pull request #339 from jfy133/rnaseq_mpcdf ... Add RNASEQ specific config for MPCDF	2022-03-07 13:59:08 +01:00
James A. Fellows Yates	975fca6721	Apply suggestions from code review	2022-03-07 13:51:00 +01:00
Alexander Peltzer	5cde6f3886	Merge pull request #342 from zajacn/master ... Update on md file	2022-03-07 13:44:00 +01:00
Natalia Zajac	c2e0c9e6d4	Update on md file	2022-03-07 12:59:56 +01:00
Phil Ewels	098296bce8	Merge pull request #341 from zajacn/master ... Addition of FGCZ config	2022-03-07 12:48:23 +01:00
Natalia Zajac	97058995ef	Update on singularity cache	2022-03-07 12:37:01 +01:00
Natalia Zajac	e07a0e548e	Config Addition	2022-03-04 12:16:01 +01:00
James Fellows Yates	70318c3b2a	Tweak eager settigs	2022-03-03 14:29:30 +01:00
James A. Fellows Yates	18890fc3cf	Merge pull request #3 from ilight1542/mpcdf_eager_config_update ... modified mpcdf configs (general + eager)	2022-03-03 14:25:58 +01:00
James A. Fellows Yates	546393ed18	Apply suggestions from code review	2022-03-03 14:22:35 +01:00
ilight1542	5a0543e4ac	Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update	2022-03-03 14:17:18 +01:00
ilight1542	25c644abb7	modified mpcdf configs (general + eager)	2022-03-03 13:55:02 +01:00
James Fellows Yates	7112e74b73	Tweak settings based on latest batch specs	2022-03-03 13:43:40 +01:00
James Fellows Yates	008ade7ab3	Merge branch 'rnaseq_mpcdf' of github.com:jfy133/nf-core-configs into rnaseq_mpcdf	2022-03-03 12:26:18 +01:00
James Fellows Yates	e649bfbb2e	Linting	2022-03-03 12:26:14 +01:00
James A. Fellows Yates	17312604cf	Update mpcdf.config	2022-03-03 12:25:06 +01:00
James Fellows Yates	94f8cbcb84	Add rnaseq pipeline specific config for MPCDF	2022-03-03 12:20:02 +01:00
James A. Fellows Yates	341ea3664e	Merge pull request #336 from jfy133/master ... Fix markdown linting from recently merged configs	2022-03-02 08:57:20 +01:00
James A. Fellows Yates	121452afad	Linting	2022-03-02 08:51:20 +01:00
James A. Fellows Yates	15a0571eae	Fix markdown	2022-03-02 08:50:42 +01:00
James A. Fellows Yates	a412510ce8	Merge pull request #335 from jfy133/master ... Remove reference to now-decomissioned dracro @ MPCDF & clean up eager @EVA	2022-03-02 08:47:47 +01:00
James A. Fellows Yates	adcfe22f98	Remove draco entry to MPCDF profiles due to decomissioning	2022-03-02 08:38:55 +01:00
James A. Fellows Yates	8174fe6d52	Merge pull request #2 from nf-core/jfy133-patch ... sync	2022-03-02 08:34:31 +01:00