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Author SHA1 Message Date
Olga Botvinnik
917ec0863d add default trimming 2019-07-03 16:01:03 -07:00
Alexander Peltzer
45d36a1506
Update cfc.config 
Add Weblog for CFC cluster
 2019-07-03 09:21:16 +02:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
70b5205d15 Add human salmon index and mouse star index 2019-06-27 15:02:47 -07:00
Olga Botvinnik
d1983f8acd Use new and improved GENCODE+ERCC annotation 2019-06-26 17:56:26 -07:00
Olga Botvinnik
cfcb533b95 Add czbiohub_aws to list of configs" 2019-06-25 19:02:49 -07:00
Olga Botvinnik
b82d68c009 Add docs 2019-06-24 17:55:01 -07:00
Olga Botvinnik
b0c67e0a9b Add both seqCenter and seq_center 2019-06-24 17:52:10 -07:00
Olga Botvinnik
acad9ac7e5 Try to clean up czb update 2019-06-24 17:50:36 -07:00
Szilveszter Juhos
b426332dc1
Merge pull request #50 from szilvajuhos/master 
Using correct reference location for munin
 2019-06-24 09:57:43 +02:00
Szilveszter Juhos
f40ed194e3 Using correct reference location for munin 2019-06-24 09:54:37 +02:00
James A. Fellows Yates
505af9a909
Merge pull request #49 from maxibor/master 
Fix queuesize Ccope and Singularity
 2019-06-18 20:36:36 +02:00
maxibor
c7eed3fa4c fix queuesize scope and singularity 2019-06-14 19:16:20 +02:00
Alexander Peltzer
ebe838ac7e
Merge pull request #45 from czbiohub/olgabot/czbiohub 
[WIP] Add CZ Biohub
 2019-06-06 13:35:34 +02:00
Olga Botvinnik
ad7e26ea69 Write out docs for czbiohub" 
git push
 2019-06-05 14:42:24 -07:00
Olga Botvinnik
268e411d10 Add czbiohub_aws to list 2019-06-05 14:42:15 -07:00
Olga Botvinnik
3a481402b8 Get czbiohub config to work 2019-06-05 14:42:07 -07:00
Alexander Peltzer
de04c5f72b
Merge pull request #47 from tobsecret/master 
updated singularity version in conf/prince.config to reflect version …
 2019-06-05 15:13:09 +02:00
Tobias Schraink
4491907f14 updated singularity version in conf/prince.config to reflect version installed on prince 
The prince admins changed the singularity version to 3.2.1 from 3.1.0, making the old version unavailable. To keep this config functional, I updated the version number for singularity.
 2019-06-04 12:56:11 -04:00
Alexander Peltzer
515e9484de
Merge pull request #44 from drpatelh/dev 
Add proper nf-core logo
 2019-06-01 12:36:57 +02:00
Olga Botvinnik
9c0315addb Use flat nongzipped files 2019-05-31 13:17:48 -07:00
Olga Botvinnik
1b2fcf5a98 Add author lines 2019-05-31 08:16:51 -07:00
drpatelh
ac804859f4 Add nf-core logo 2019-05-31 00:47:06 +01:00
Olga Botvinnik
66eeeebe81 Initial commit of CZBiohub 2019-05-30 11:15:38 -07:00
Alexander Peltzer
441ddbcdab
Newest Update is 3.0.3 2019-05-28 15:25:10 +02:00
Alexander Peltzer
0acdcc3813 Add Aquila Config Singapore 2019-05-04 23:20:15 +02:00
Alexander Peltzer
4cad12c918
Merge pull request #42 from maxibor/master 
Add automounts for singularity
 2019-04-25 17:14:28 +02:00
maxibor
de1b2aa7d2 remove autoformat added space 2019-04-25 15:50:48 +02:00
maxibor
efd831a8a3 add automounts for singularity 2019-04-25 15:48:20 +02:00
Alexander Peltzer
7d7c18273b
Merge pull request #41 from tobsecret/master 
Added configs for NYU clusters BigPurple (NYU Med) and Prince (NYU main campus)

Last PR merge before Easter holiday ;-)
 2019-04-19 00:13:49 +02:00
Tobias Schraink
d91b06d884 added missing line in prince and bigpurple docs 2019-04-18 14:25:27 -04:00
Tobias Schraink
b6c1d3ba51 added bigpurple and prince doc links in README 2019-04-18 14:23:17 -04:00
Tobias Schraink
4ba831705d added nyu prince and bigpurple md files, added singularity cacheDir to prince and bigpurple configs 2019-04-18 14:13:02 -04:00
Alexander Peltzer
f699c3ad18
Merge pull request #40 from maxibor/master 
Add iGenomes basePath for SHH
 2019-04-18 12:21:22 +02:00
maxibor
9d9ac4c3bb remove whitespace 2019-04-18 11:22:54 +02:00
maxibor
c41dd2c65f Merge branch 'master' of https://github.com/nf-core/configs 2019-04-18 11:21:27 +02:00
maxibor
1772f4119c adding igenomes to shh config 2019-04-18 11:19:53 +02:00
Tobias Schraink
4a915e330a added warnings to run on SCRATCH 2019-04-17 17:15:16 -04:00
Tobias Schraink
51c2a54399 added nyu prince and bigpurple configs 2019-04-17 16:59:38 -04:00
James A. Fellows Yates
37ae0fa3a6
Merge pull request #38 from maxibor/master 
add queueSize limited to 5 for SHH short queue
 2019-03-20 13:52:59 +01:00
maxibor
76a5fcf077 switch to queueSize 16 for shh config 2019-03-20 13:44:13 +01:00
maxibor
0929349303 add queueSize limited to 5 2019-03-18 11:13:11 +01:00
Phil Ewels
009e8f52e3
Merge pull request #37 from KochTobi/patch-1 
Update cfc config
 2019-03-16 16:26:46 +01:00
KochTobi
aaa7be049a
Update cfc config 
* Change singularity version documentation
 2019-03-16 14:11:59 +01:00
Alexander Peltzer
d95b464e13
Merge pull request #35 from jfy133/master 
Updates to SHH config
 2019-03-15 09:56:44 +01:00
James A. Fellows Yates
ecb36dd8c2
Reduced memory and CPUs for cdag compatibility 
Also matches 'fair use' policy
 2019-03-14 21:26:43 +01:00
James A. Fellows Yates
e503a3a064
Added new cluster and singularity cache 2019-03-14 21:21:31 +01:00
James A. Fellows Yates
3da1373c14
Updated path to centralised singularity cache 2019-03-14 21:16:02 +01:00
James A. Fellows Yates
b4e8e271be
Merge pull request #3 from nf-core/master 
Syncing
 2019-03-14 21:13:48 +01:00
Phil Ewels
2e9a8642c0
Merge pull request #32 from phue/update-mendel-documentation 
MENDEL: remove singularity support
 2019-03-14 15:04:39 +01:00