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Author SHA1 Message Date
Martin Proks
c583aa0233 Added kraken config (#15) 
* Added kraken template
* docs: updated some info
* fix: updated igenomes_base path
 2019-08-05 11:19:05 +02:00
Harshil Patel
5abe8bca35
Merge pull request #60 from drpatelh/master 
Attempt to get travis tests working
 2019-08-01 13:46:44 +01:00
drpatelh
91a5e64e1c Ignore czbiohub_aws 2019-08-01 09:42:50 +01:00
drpatelh
e0c684ee8f Aarrrgh pulling configs from master 2019-07-31 23:39:42 +01:00
drpatelh
a692ded933 Remove workDir in czbiohub 2019-07-31 23:30:51 +01:00
drpatelh
7ee70fb742 Add in uppmax-devel 2019-07-31 22:52:20 +01:00
drpatelh
0326b56038 Add czbiohub back in 2019-07-31 22:48:22 +01:00
drpatelh
eb0e89eeaa Remove SCRATCH variable 2019-07-31 22:44:54 +01:00
drpatelh
f3e61fdd66 Add prince back in 2019-07-31 22:40:43 +01:00
drpatelh
0f6802a7c8 Add hebbe back in 2019-07-31 22:37:11 +01:00
drpatelh
a496bfaeef Remove uppmax_devel 2019-07-31 22:33:49 +01:00
drpatelh
70919d0dd3 Remove more configs 2019-07-31 22:28:03 +01:00
drpatelh
8be2897961 Remove problematic configs 2019-07-31 22:27:37 +01:00
drpatelh
daf1b9dcd2 Fix type in uppmax-devel 2019-07-31 22:09:30 +01:00
drpatelh
840a97ed68 Clean up and alphabetasize 2019-07-31 21:52:16 +01:00
drpatelh
6298f78bf4 .travis.yml 2019-07-31 21:33:47 +01:00
Alexander Peltzer
ead80fb9d0
Drop config 2019-07-30 18:54:38 +02:00
Alexander Peltzer
d9930b053c
Drop aquila 2019-07-30 18:53:45 +02:00
Alexander Peltzer
82ffedf895
Drop aquila 2019-07-30 18:53:36 +02:00
Alexander Peltzer
4e48d4cc62
Fix remaining points by drpatelh 2019-07-30 18:53:00 +02:00
Alexander Peltzer
29a141adca
Sort it 2019-07-30 16:54:58 +02:00
Alexander Peltzer
35c715ca3b
Merge remote-tracking branch 'upstream/master' 2019-07-30 16:53:19 +02:00
Alexander Peltzer
e29f46eaeb
Merge pull request #58 from rplanel/master 
Add Institut Pasteur config
 2019-07-30 16:50:11 +02:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
Remi Planel
be28a34839 Updat Pasteur doc 2019-07-30 16:12:30 +02:00
Remi Planel
f9a2baf614 Add link to Pasteur doc 2019-07-30 16:10:33 +02:00
Remi Planel
64e78a3dc1 Update the doc 2019-07-30 15:17:25 +02:00
Remi Planel
6f264ac2ca Add pasteur profile doc 2019-07-30 15:15:30 +02:00
Remi Planel
b4cffe0455 Remove buggy cluster option 2019-07-30 15:15:07 +02:00
Remi Planel
96ea16ddbd Ignore vscode workspace 2019-07-30 15:14:18 +02:00
Harshil Patel
c522408888
Merge pull request #57 from marchoeppner/dev 
Adding CCGA DX cluster config
 2019-07-29 13:13:13 +02:00
marchoeppner
b74f020f14
Update docs/ccga_dx.md 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-07-29 12:45:30 +02:00
marchoeppner
7d5de651aa
Update README.md 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-07-29 12:45:08 +02:00
marchoeppner
b31db18dfb Adding config file for CCGA dx cluster 2019-07-29 12:08:07 +02:00
marchoeppner
71bc98afae Adding config file for CCGA dx cluster 2019-07-29 12:06:29 +02:00
Remi Planel
fbb33fde63 Details 2019-07-24 11:43:08 +02:00
Remi Planel
1cb132a457 Define a profile for the Pasteur config 2019-07-24 11:32:25 +02:00
Remi Planel
1b30c5a4d2 Add the Pasteur profile 2019-07-24 11:32:02 +02:00
Alexander Peltzer
9106559b2f
Update cfc.config 2019-07-15 17:53:11 +02:00
Olga Botvinnik
c59ca56525
Merge pull request #51 from czbiohub/olgabot/czb-update 
[WIP] CZ Biohub update
 2019-07-09 16:02:33 -07:00
Olga Botvinnik
474e98daaf
Merge branch 'master' into olgabot/czb-update 2019-07-09 16:02:25 -07:00
Alexander Peltzer
85f9b2e661
Merge pull request #55 from marchoeppner/ccga-config 
Updating CCGA config file
 2019-07-05 08:52:01 +02:00
marchoeppner
fe0153befd Updating CCGA documentation 2019-07-05 08:30:02 +02:00
marchoeppner
d66bf4e478 Updating CCGA documentation 2019-07-05 08:28:18 +02:00
marchoeppner
cb507177d5 Updating CCGA config file 2019-07-05 08:03:37 +02:00
Olga Botvinnik
069963ff8a Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else 2019-07-03 16:01:47 -07:00
Olga Botvinnik
917ec0863d add default trimming 2019-07-03 16:01:03 -07:00
Alexander Peltzer
45d36a1506
Update cfc.config 
Add Weblog for CFC cluster
 2019-07-03 09:21:16 +02:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
70b5205d15 Add human salmon index and mouse star index 2019-06-27 15:02:47 -07:00