millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-23 16:49:55 +00:00
Code Issues Releases Packages Activity
1712 commits 4 branches 0 tags 1.9 MiB
Commit graph

1712 commits

This branch
This branch
All branches
Author SHA1 Message Date
James A. Fellows Yates
cf6e697f0b
Further update aln based on modifications of EAGER defaults 2020-05-07 09:16:08 +02:00
James A. Fellows Yates
4d7e9ccf2f
Apply suggestions from review 2020-05-06 08:35:23 +02:00
James A. Fellows Yates
4804052b23
Update SHH nf-core/eager pipeline docs 2020-05-04 21:04:17 +02:00
James A. Fellows Yates
d42d7f4146
Sets the bwa aln parameter to 0.01 which is more commonly used at SHH 2020-05-04 21:02:16 +02:00
FriederikeHanssen
d6813d9c39 Add scratch = true to avoid writing of intermediate file to /tmp 2020-05-04 17:09:43 +02:00
Maxime Garcia
fe77f02551
Merge pull request #150 from MaxUlysse/Munin 
update rnafusion munin specific config
 2020-04-28 17:46:17 +02:00
MaxUlysse
e6f4d58fa6 update rnafusion munin specific config 2020-04-28 17:06:04 +02:00
Adrian
ad12bd4ad1 testing automounts 2020-04-28 16:03:06 +01:00
Adrian
1e68a10ef0 adding documentation for icr_davros 2020-04-28 16:02:26 +01:00
Harshil Patel
2300d5a962
Update genomes.config 2020-04-09 18:22:41 +01:00
Harshil Patel
a17cac1ceb
Merge pull request #149 from MaxUlysse/viralreconupdate 
Viralreconupdate
 2020-04-09 18:22:06 +01:00
Harshil Patel
53125368be
Merge branch 'master' into viralreconupdate 2020-04-09 18:21:05 +01:00
Harshil Patel
6834f020cb
Update viralrecon.config 2020-04-09 17:49:15 +01:00
MaxUlysse
5678494e45 fix typo 2020-04-09 17:13:19 +02:00
MaxUlysse
50a44d037b better docs and organisation of giles 2020-04-09 17:02:36 +02:00
Harshil Patel
6adc7342e9
Merge pull request #148 from MaxUlysse/viralrecon 
add viralrecon specific config
 2020-04-09 13:34:23 +01:00
Harshil Patel
4fd9b73cec
Update pipeline/viralrecon.config 2020-04-09 13:31:39 +01:00
Harshil Patel
290d0a2180
Update pipeline/viralrecon.config 2020-04-09 13:31:20 +01:00
MaxUlysse
19316ce852 add viralrecon specific config 2020-04-09 13:40:35 +02:00
Maxime Garcia
de5b7717ff
Merge pull request #147 from nf-core/MaxUlysse-patch-1 
Update uppmax.config
 2020-04-09 12:08:41 +02:00
Maxime Garcia
34dc18faf6
Update uppmax.config 2020-04-09 11:35:37 +02:00
Adrian Larkeryd
405801638a icr_davros sarek config description 2020-04-08 11:56:17 +01:00
Adrian Larkeryd
78be4b358e icr_davros igenomes base 2020-04-08 11:55:16 +01:00
Adrian Larkeryd
82965d25c8 hostname warning for davros 2020-04-08 11:54:34 +01:00
Maxime Garcia
d1ff87a416
Merge pull request #145 from bioatlas/master 
Adding UPPMAX specific config for ampliseq
 2020-03-31 15:46:21 +02:00
Daniel Lundin
e77cd38092 Adding ampliseq/UPPMAX doc to README.md 2020-03-31 15:42:25 +02:00
Daniel Lundin
e0f9374272
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:19 +02:00
Daniel Lundin
5a557ed7d5
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:12 +02:00
Daniel Lundin
79ef94de47
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:04 +02:00
Daniel Lundin
c8de9be701 Adding UPPMAX specific config for ampliseq 2020-03-31 15:17:24 +02:00
Phil Ewels
554ab6673c
Merge pull request #144 from MaxUlysse/UPPMAX 
[UPPMAX] add s.* pattern for bianca cluster
 2020-03-30 17:01:38 +02:00
MaxUlysse
db2dd4458b Merge remote-tracking branch 'upstream/master' into UPPMAX 2020-03-30 16:41:08 +02:00
MaxUlysse
8b570507cd update s 2020-03-30 16:40:11 +02:00
Gisela Gabernet
15574ab849
Merge pull request #143 from ggabernet/master 
add cfc_dev profile
 2020-03-23 17:46:34 +01:00
ggabernet
fa01e6c5c1 add cfc_dev to test yml 2020-03-23 17:27:36 +01:00
ggabernet
d02e2b8a36 add cfc_dev and warning for binac and cfc 2020-03-23 17:22:02 +01:00
ggabernet
c81f693f73 add cfc_dev config 2020-03-23 17:16:34 +01:00
Olga Botvinnik
f414b4c52d
Merge pull request #142 from nf-core/olgabot-patch-1 
Add AaegL5.0 genome to czbiohub_aws
 2020-03-17 16:46:12 -07:00
Olga Botvinnik
52369ba6ad
Add AaegL5.0 config 2020-03-17 16:45:20 -07:00
Maxime Garcia
8b1835484e
Merge pull request #141 from nf-core/MaxUlysse-patch-1 
Update munin.config
 2020-03-12 17:31:09 +01:00
Maxime Garcia
123132d89a
Update munin.config 
fix typo
 2020-03-12 17:23:55 +01:00
Phil Ewels
5a3bdcca5b
Merge pull request #139 from Emiller88/utd 
fix(ganymede): use singularity/2.4.5
 2020-03-11 16:54:01 +00:00
Edmund Miller
034020e202
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2020-03-11 16:45:20 +00:00
Maxime Garcia
a3934c84e0
Merge pull request #140 from MaxUlysse/Munin 
Update Munin specific configs
 2020-03-11 15:55:11 +01:00
Maxime Garcia
b6d52fdb89
Update conf/pipeline/sarek/munin.config 2020-03-11 15:48:29 +01:00
Maxime Garcia
0f34d757a9
Update munin.config 2020-03-11 15:48:17 +01:00
MaxUlysse
4a7f98a83b update TOC 2020-03-11 15:41:58 +01:00
MaxUlysse
6be1716797 revert * to - changes 2020-03-11 15:39:36 +01:00
MaxUlysse
d4bea56f52 add munin/rnafusion specific docs + markdownlint 2020-03-11 14:23:23 +01:00
MaxUlysse
7c60096952 update docs for munin/sarek specific config 2020-03-11 14:17:24 +01:00