1748 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Simon Pearce	897d0a188b	Update nfcore_custom.config ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-09-01 10:32:43 +01:00
Simon Pearce	df685f4f0f	Merge branch 'master' into crukmi	2022-09-01 10:29:08 +01:00
James A. Fellows Yates	3664b4812d	Merge pull request #411 from nf-core/docs-improvement ... Add documentation for when you need to use an environmental variable	2022-09-01 11:24:31 +02:00
Simon Pearce	81768e16a9	Merge branch 'nf-core:master' into crukmi	2022-09-01 10:20:25 +01:00
James A. Fellows Yates	5769927bbc	Merge branch 'master' into docs-improvement	2022-09-01 11:15:10 +02:00
Maxime U. Garcia	ebcc3d278f	Merge pull request #410 from nf-core/chear-var-fix ... Fix cheaha config due to use of environmental variable	2022-09-01 11:13:37 +02:00
James Fellows Yates	51f0359b3d	Add documentation for when you need to use an environmental variable	2022-09-01 11:12:15 +02:00
Simon Pearce	14a97ad0e8	Merge branch 'master' into crukmi	2022-09-01 10:07:24 +01:00
James Fellows Yates	b22e8b79c7	Fix cheaha config due to use of environmental variable	2022-09-01 11:01:23 +02:00
ameynert	69468e7ca7	Merge pull request #409 from kalayaneech/master ... A new profile for adcra [KMUTT]	2022-09-01 09:55:12 +01:00
ameynert	28e59e38b4	Run prettier	2022-09-01 09:28:05 +01:00
Kalayanee Chairat	8e275182ea	Update main.yml	2022-09-01 15:16:56 +07:00
Kalayanee Chairat	bf2ab39ea0	Update README.md	2022-09-01 15:15:51 +07:00
Kalayanee Chairat	9681716205	Update adcra.config ... Fixing typo	2022-09-01 15:11:18 +07:00
Kalayanee Chairat	700f14d828	Merge pull request #1 from nf-core/master ... Merging from master	2022-09-01 15:07:43 +07:00
Simon Pearce	864da0b5be	Merge branch 'master' into crukmi	2022-08-31 18:19:47 +01:00
Bruno Grande	9a37404a04	Merge branch 'master' into bgrande/sage-aws	2022-08-31 09:22:07 -07:00
Bruno Grande	179b343bd2	Incorporate resource limits	2022-08-31 09:18:27 -07:00
Bruno Grande	c883723559	Simplify resource adjustments	2022-08-31 09:10:30 -07:00
SPearce	1e1ca1e96b	Incorporating executor options	2022-08-31 15:35:57 +01:00
Annick Renevey	bfeafdbf25	Merge pull request #408 from nf-core/rnafusion_config_hasta ... rnafusion setup for hasta usage [WIP]	2022-08-31 14:36:08 +02:00
Annick Renevey	242101db16	fix extra space	2022-08-31 14:26:32 +02:00
Annick Renevey	0851903f66	include new config in pipeline configs file	2022-08-31 14:19:07 +02:00
Annick Renevey	51871ea6fc	rnafusion setup for hasta usage	2022-08-31 11:32:01 +02:00
Lara Ianov	08b62ede83	Merge pull request #404 from nf-core/cheaha_singularity_update ... Cheaha Config Update	2022-08-30 14:45:50 -05:00
Austyn Trull	90f638d376	Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity	2022-08-29 10:47:46 -05:00
James A. Fellows Yates	b33aef1431	Merge pull request #386 from andrewfrank/patch-2 ... Update google.config to fix custom VM memory error	2022-08-29 08:30:39 +02:00
James A. Fellows Yates	c70a95f9c9	Merge branch 'master' into patch-2	2022-08-29 08:23:31 +02:00
Bruno Grande	9c8cb71bc7	Merge branch 'master' into bgrande/sage-aws	2022-08-25 16:29:20 -07:00
Bruno Grande	317e5a16cb	Improve AWS-related config for Sage profile	2022-08-25 16:24:52 -07:00
Harshil Patel	84b0b705a2	Merge pull request #405 from drpatelh/monkeypox ... Replace NC_063383.1 fasta and gff and add Nextclade config	2022-08-25 12:57:43 +01:00
kalayaneech	93c4ba67a0	adding adcra configuration	2022-08-25 16:17:09 +07:00
Harshil Patel	8b9661825b	Replace NC_063383.1 fasta and gff and add Nextclade config	2022-08-24 15:21:44 +01:00
Harshil Patel	d71e31c378	Merge pull request #403 from drpatelh/monkeypox ... Add monkeypox genome files to viralrecon genome config file	2022-08-24 12:16:21 +01:00
Harshil Patel	8dcfcfd856	Add monkeypox genome files to viralrecon genome config file	2022-08-24 12:13:17 +01:00
Austyn Trull	8d5ae4c3ab	Committing changes made by Brandon Wilk so that singularity containers will use scratch space	2022-08-23 15:30:13 -05:00
Ramprasad Neethiraj	49c71e0c28	Merge pull request #363 from ramprasadn/feat/hasta_update ... Add a profile for stubruns in hasta	2022-08-23 22:14:18 +02:00
Ramprasad Neethiraj	9182b55acc	Merge branch 'master' into feat/hasta_update	2022-08-23 11:21:58 +02:00
Anders Jemt	9c26cfddaa	Merge pull request #390 from raysloks/feat/hasta_java_memory_fix ... Feat/hasta java memory fix	2022-08-22 15:46:39 +02:00
Ramprasad Neethiraj	7ff2977a29	Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update	2022-08-18 15:58:56 +02:00
Ramprasad Neethiraj	dd63dee7aa	update conf	2022-08-18 15:56:41 +02:00
Ramprasad Neethiraj	1c942759ea	update sentieon	2022-08-18 15:52:31 +02:00
Ramprasad Neethiraj	a6cce4ab6a	Merge branch 'master' into feat/hasta_java_memory_fix	2022-08-18 13:36:08 +02:00
Phil Ewels	ea89504bc7	Merge pull request #397 from ErikDanielsson/add-citation-cff ... Add `CITATION.cff` for the nf-core publication	2022-08-18 09:27:08 +02:00
SPearce	8ae3cba5e3	Reduce MPILEUP to 5GB	2022-08-15 11:35:59 +01:00
SPearce	d0662a3acb	Ran prettier	2022-08-15 09:33:30 +01:00
SPearce	a97b887d93	Written a help file	2022-08-12 16:57:04 +01:00
SPearce	0bfedde296	Initial attempt at a CRUKMI config file	2022-08-12 15:43:22 +01:00
Gwenna Breton	99df08f409	Merge pull request #395 from ClinicalGenomicsGBG/medair ... New config: Add config for Medair	2022-08-09 11:03:56 +02:00
Gwenna Breton	0e4f2b40d3	Added email of IT group	2022-08-08 16:14:17 +02:00