133 commits

Author	SHA1	Message	Date
Rogan Grant	54298ca0f7	Merge branch 'nf-core:master' into master	2021-09-04 15:37:03 -05:00
Marc Trunjer Kusk Nielsen	06632d541d	Update main.yml	2021-08-31 14:35:24 +02:00
James Fellows Yates	f41cb5986f	remove from testing	2021-08-20 10:18:04 +02:00
Rogan Grant	e28a836702	Added nu_genomics to list	2021-07-28 13:10:18 -05:00
BarryDigby	871b82f6f4	Merge branch 'master' into master	2021-07-28 12:16:16 +01:00
Barry digby	2b6e80561a	Merge branch 'master' of https://github.com/nf-core/configs into	2021-07-27 17:13:17 +01:00
Barry digby	04c0da5a2f	nuig confg (lugh)	2021-07-27 17:05:27 +01:00
MaxUlysse	895c4eb610	fix: closes #260 + sort some lines	2021-07-27 16:35:19 +02:00
Maxime U. Garcia	30e058abf0	Merge branch 'master' into master_kraken	2021-07-20 09:26:56 +02:00
ggabernet	e6f1bfaa1a	finally add profile	2021-07-03 15:13:10 +02:00
ggabernet	6475671c38	test that it fails	2021-07-03 14:57:58 +02:00
ggabernet	79fffbd77f	update changes	2021-07-03 14:39:17 +02:00
ggabernet	f3274c49b5	test profile multiline	2021-07-03 14:36:56 +02:00
Gisela Gabernet	e2088a008d	Merge branch 'master' into master	2021-07-03 12:24:42 +02:00
ggabernet	f8690d49e8	add to tests	2021-07-03 12:21:03 +02:00
Edmund Miller	cb213a499c	ci: Another missing comma	2021-06-17 09:34:03 -05:00
Edmund Miller	7ff1c6cc7d	ci: Add sysbio	2021-06-16 21:19:49 -05:00
ikeller	af1e57027d	edit config and readme	2021-05-19 09:46:07 +02:00
Barry digby	8340e89768	nuig.config first commit	2021-04-28 17:28:01 +01:00
Anthony Underwood	fa267c0cf9	Add sanger to tests	2021-04-21 21:01:25 +01:00
MaxUlysse	3918e0aa9d	feat: remove kraken profile	2021-04-13 15:14:14 +02:00
James A. Fellows Yates	161c3a33d4	Merge branch 'master' into eva	2021-04-07 19:28:16 +02:00
James Fellows Yates	be1d35840d	Add EVA and EAGER@EVA	2021-04-06 17:48:16 +02:00
phue	8fc60e2e70	add config for biohpc_gen	2021-03-29 19:25:58 +02:00
ameynert	2d90c919aa	Added eddie profile to github workflow tests	2021-03-24 13:51:37 +00:00
Asaf Peer	93bde78faa	added JAX conf	2021-03-21 06:47:52 -04:00
Noirot Céline	7e9f83ee81	Add IFB config	2021-03-16 15:54:19 +01:00
James Fellows Yates	5bfb9510c7	Add to testing	2021-02-14 17:59:55 +01:00
Charles Plessy	1608b36dcf	Institutional profile for Okinawa Institute of Science and Technology	2021-02-02 17:40:10 +09:00
James A. Fellows Yates	7cffcf809b	Update main.yml	2021-01-21 12:50:14 +01:00
James A. Fellows Yates	964cae4ac7	Add CEH to CI	2021-01-21 06:22:37 +01:00
Combiz Khozoie	4bb52358f5	updated Github Actions YML	2020-12-18 10:27:40 +00:00
lecorguille	c974972585	Add ABiMS - side files	2020-10-23 00:12:02 +02:00
James A. Fellows Yates	af8d25ed09	Update main.yml	2020-09-04 20:14:35 +02:00
Phil Ewels	a7c8cbc410	Fix new CI test	2020-06-26 14:30:53 +02:00
Phil Ewels	b587a2d031	Remove env vars from CI test and try running -show-profiles	2020-06-26 14:24:51 +02:00
Phil Ewels	da46b1cd9a	Remove --custom_config_base from CI test command	2020-06-26 14:13:49 +02:00
Phil Ewels	18a1a319ec	More uct_hex references	2020-06-17 15:25:07 +02:00
Adrian	3e4db8c845	adding icr_davros to test	2020-06-03 14:55:58 +01:00
Piotr Faba	f5e2a9f9f3	try without dummy.config: use relative path	2020-05-27 16:55:37 +02:00
Piotr Faba	3ad0003979	test without dummy config	2020-05-27 16:46:08 +02:00
Piotr Faba	1a9db371c3	remove echos	2020-05-27 16:43:32 +02:00
Piotr Faba	ac47d020cb	debug: continue	2020-05-27 16:38:11 +02:00
Piotr Faba	ff5fdd097b	debug	2020-05-27 16:35:55 +02:00
Piotr Faba	ab3070582e	Fix paths to dummy.config	2020-05-27 16:32:19 +02:00
Piotr Faba	66f191a1cf	declate NXF_GLOBAL_CONFIG in ci	2020-05-27 16:30:00 +02:00
Piotr Faba	1354ae4063	add bi config	2020-05-27 16:19:15 +02:00
ggabernet	fa01e6c5c1	add cfc_dev to test yml	2020-03-23 17:27:36 +01:00
Edmund Miller	034020e202	Apply suggestions from code review ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2020-03-11 16:45:20 +00:00
Edmund Miller	04f2fa1c5d	chore: add new config PR template	2020-03-10 09:49:31 -05:00
Edmund Miller	b79f0f0a21	ci: add utd_gaymede to main	2020-03-09 20:11:52 -05:00
marcel-keller	f48a4cbfb8	Update main.yml	2020-03-09 16:25:19 +02:00
Alexander Peltzer	ebae81ceb3	Update main.yml ... Drop CCGA, as it was removed in an intermediate merge.	2020-03-06 17:18:03 +01:00
Evan Floden	44cd3089de	Alphabetical ordering of GitHub workflows	2020-03-06 09:48:00 +01:00
Evan Floden	8a9d3ad8a0	First commit of Google Cloud config	2020-03-06 05:47:29 +00:00
marchoeppner	0830203b70	Adding new CCGA Med Cluster to profiles ... Updating README and fixing linting errors in CCGA_MED profile Fixing order in profile queue and removed leading slash from readme for ccga profile docs Fixing order in profile queue and removed leading slash from readme for ccga profile docs	2020-02-11 11:12:51 +01:00
Maxime Garcia	78826c9d4e	Merge branch 'master' into UPPMAX	2019-12-05 12:52:34 +01:00
jfy133	3fc1377ff2	Remove mysterious new line	2019-12-05 12:16:01 +01:00
jfy133	41a795f996	Fixed github actions test	2019-12-05 12:14:01 +01:00
MaxUlysse	cdbdbee0eb	replace -profile uppmax_devel by -profile uppmax,devel	2019-12-05 11:49:44 +01:00
James A. Fellows Yates	c725c71e4d	Merge branch 'master' into master	2019-11-26 20:34:42 +01:00
jfy133	c89ca84244	Updated github actions test - typo fix	2019-11-26 20:24:23 +01:00
jfy133	e6bf470962	Updated github actions test	2019-11-26 20:23:04 +01:00
Alexander Peltzer	9e6e4343d7	Merge branch 'master' into master	2019-11-26 15:13:32 +01:00
Noirot Céline	0fdcf8c70c	Update .github/workflows/main.yml ... Co-Authored-By: Alexander Peltzer <apeltzer@users.noreply.github.com>	2019-11-26 15:10:13 +01:00
Alexander Peltzer	5c39c1ed1a	Merge branch 'master' into master	2019-11-26 15:07:31 +01:00
noirot	3d8da62db3	add genotoul profile name to the build matrix	2019-11-26 14:57:17 +01:00
Alexander Peltzer	bac91d03fa	Ignore czi stuff for now	2019-11-26 14:38:57 +01:00
Alexander Peltzer	2ebd2180ed	Add in SCRATCH env	2019-11-26 14:27:22 +01:00
Alexander Peltzer	47ac2085f7	Better names	2019-11-26 14:12:41 +01:00
Alexander Peltzer	0afe00ded5	Generalize name	2019-11-26 14:12:19 +01:00
Alexander Peltzer	c3c7c74d79	Better code	2019-11-26 14:11:16 +01:00
Alexander Peltzer	dea11df453	Both on PR and on push	2019-11-26 14:07:25 +01:00
Alexander Peltzer	ebb89f2714	Don't check that anymore	2019-11-26 14:06:30 +01:00
Alexander Peltzer	cb876594a3	Proper user tests now :-)	2019-11-26 13:57:32 +01:00
Alexander Peltzer	7e3efcac5c	Enjoy	2019-11-26 00:59:09 +01:00
Alexander Peltzer	3d7f5436b1	Its in workflows	2019-11-26 00:54:17 +01:00
Alexander Peltzer	5a1dbf2dc7	Rename configs tests	2019-11-26 00:52:39 +01:00
Alexander Peltzer	4062c8b4dc	Fix indentation	2019-11-26 00:51:08 +01:00
Alexander Peltzer	aeb2fb6dc0	Fix all the markdownlinting errors	2019-11-26 00:48:17 +01:00
Alexander Peltzer	2d16917473	Fix linting	2019-11-26 00:34:55 +01:00
Alexander Peltzer	64a3240a51	Fix linting	2019-11-26 00:29:04 +01:00
Alexander Peltzer	b084b9ad3c	Adds in GitHub Actions tests	2019-11-26 00:25:49 +01:00