Alexander Peltzer
edc34e7358
Merge pull request #128 from nf-core/mseybold-patch-1
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Update cfc.config
2020-03-06 11:15:16 +01:00
mseybold
48400b8863
Update RADME.md
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fixed link to cfc.md
2020-03-06 11:14:27 +01:00
mseybold
2135996b13
Update cfc.md
2020-03-06 11:12:21 +01:00
mseybold
52842de88b
Update cfc.config
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test failed, so added the the default queue
2020-03-06 10:46:37 +01:00
mseybold
8e42bbd7d0
Update cfc.config
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We just added some new HighMem nodes to the cfc, Partition/queue name is qbic, each node has 128Cores and 2TB of RAM.
The old queue (Name compute) is set to default by slurm.
Each process over 60GB of RAM or over 20cpus should run on those new nodes.
So added the queue State and adjusted the max_memory and max_cpu setting.
2020-03-06 10:25:08 +01:00
Evan Floden
44cd3089de
Alphabetical ordering of GitHub workflows
2020-03-06 09:48:00 +01:00
Evan Floden
87e8da61a4
Readme formatting
2020-03-06 05:58:59 +00:00
Evan Floden
8a9d3ad8a0
First commit of Google Cloud config
2020-03-06 05:47:29 +00:00
Alexander Peltzer
cd1932e9bb
Merge pull request #126 from phue/cbe-container-cache
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cbe: move container cache to different filesystem
2020-03-05 17:02:32 +01:00
phue
e2e4dd05d3
cbe: move container cache to different filesystem
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this is a workaround for squashfs errors that occur when containers are run from beeGFS
2020-03-05 16:34:20 +01:00
James A. Fellows Yates
116720e690
Merge pull request #125 from jfy133/master
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Try 'cleanup' profile option to by default cleanup work directory
2020-03-04 07:40:34 +01:00
James A. Fellows Yates
41a45187fa
Experiment to see if 'cleanup = true' works as expected
2020-03-03 16:47:49 +01:00
James A. Fellows Yates
5d8c4f9c50
Merge pull request #9 from nf-core/master
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Syncing
2020-03-03 16:46:09 +01:00
Johannes Alneberg
263230fdde
Merge pull request #124 from nf-core/Update-sarek-specific-UPPMAX-config
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Update sarek specific UPPMAX config
2020-02-28 07:38:34 +01:00
Maxime Garcia
9a8bb12020
Update conf/pipeline/sarek/uppmax.config
2020-02-27 17:22:03 +01:00
Maxime Garcia
8acbdacf03
Update conf/pipeline/sarek/uppmax.config
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Co-Authored-By: Johannes Alneberg <johannes.alneberg@scilifelab.se>
2020-02-27 17:21:03 +01:00
Maxime Garcia
09ff8f5790
Update conf/pipeline/sarek/uppmax.config
2020-02-27 17:02:31 +01:00
Maxime Garcia
17d6a7e922
Update conf/pipeline/sarek/uppmax.config
2020-02-27 17:02:13 +01:00
Maxime Garcia
ab8998e12b
Update uppmax.config
2020-02-27 16:52:51 +01:00
Phil Ewels
752a83b4c7
Merge pull request #123 from ewels/params-overwrite
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Remove params.custom_config_base from nf-core/configs
2020-02-27 12:23:04 +01:00
Phil Ewels
46b08c82e2
Remove params.custom_config_base from nf-core/configs
2020-02-27 11:53:38 +01:00
Maxime Garcia
47de9b8f76
Merge pull request #121 from MaxUlysse/Uppmax
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Uppmax
2020-02-27 11:11:12 +01:00
MaxUlysse
a8d338d2aa
Merge branch 'Uppmax' of github.com:MaxUlysse/nf-core_configs into Uppmax
2020-02-24 14:37:27 +01:00
MaxUlysse
9f74e88041
update file
2020-02-24 14:36:45 +01:00
Marc Hoeppner
6c5a5c8bcb
Removing old CCGA profile from docs and linting
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Removing CCGA profile from master config
Removing CCGA profile from master config
2020-02-24 12:16:33 +01:00
Maxime Garcia
9b897345da
Update conf/pipeline/sarek/uppmax.config
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Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
2020-02-21 08:16:31 +01:00
Maxime Garcia
2144a1dc04
Apply suggestions from code review
2020-02-20 17:19:30 +01:00
Maxime Garcia
08e2804b37
Merge branch 'master' into Uppmax
2020-02-20 17:18:46 +01:00
MaxUlysse
aa905cd645
add UPPMAX specific sarek config
2020-02-20 17:14:18 +01:00
Maxime Garcia
fed5524695
Merge pull request #120 from nf-core/d4straub-patch-1
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Update binac.config
2020-02-19 11:33:47 +01:00
Daniel Straub
744db30da4
Update binac.config
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This is now close to optimal I think.
2020-02-19 11:27:02 +01:00
Alexander Peltzer
01d571cc4c
Merge pull request #119 from MaxUlysse/master
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Add social preview image
2020-02-18 00:19:52 +01:00
MaxUlysse
f16c740863
add social preview image
2020-02-12 11:58:26 +01:00
Harshil Patel
abcbb0f5ca
Merge pull request #118 from marchoeppner/ccga-config
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Adding new CCGA Med Cluster to profiles
2020-02-11 12:00:36 +00:00
Harshil Patel
ef8534d481
Update README.md
2020-02-11 11:57:04 +00:00
marchoeppner
0830203b70
Adding new CCGA Med Cluster to profiles
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Updating README and fixing linting errors in CCGA_MED profile
Fixing order in profile queue and removed leading slash from readme for ccga profile docs
Fixing order in profile queue and removed leading slash from readme for ccga profile docs
2020-02-11 11:12:51 +01:00
Daniel Straub
a5e183266e
Merge pull request #117 from nf-core/d4straub-patch-1
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Cleanup config
2020-02-07 15:18:18 +01:00
Daniel Straub
b7be65a31e
Cleanup config
2020-02-07 14:53:43 +01:00
Alexander Peltzer
30735c3de7
Merge pull request #115 from nf-core/d4straub-patch-1
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Update binac.config
2020-01-28 11:45:29 +01:00
Daniel Straub
7346bffdc8
Update binac.config
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Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.
2020-01-28 08:48:34 +01:00
James A. Fellows Yates
28d7e4d4e8
Merge pull request #113 from jfy133/master
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Updates SHH specific nf-core/eager pipeline
2019-12-21 22:28:38 +01:00
James A. Fellows Yates
799f2d5788
Grammar tweak
2019-12-21 20:59:48 +01:00
James A. Fellows Yates
435a5892ea
Updated docs corresponding to 638758423a
2019-12-21 20:59:25 +01:00
James A. Fellows Yates
638758423a
Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max
2019-12-21 20:55:54 +01:00
James A. Fellows Yates
5632a0631a
Merge pull request #8 from nf-core/master
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Syncing
2019-12-21 20:51:38 +01:00
Harshil Patel
01b7357d1d
Merge pull request #112 from drpatelh/master
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Change iGenomes path after fullish sync
2019-12-18 11:12:27 +00:00
drpatelh
bcb8950c2f
Change URL to website
2019-12-18 10:57:12 +00:00
drpatelh
be5ed21269
Update docs
2019-12-18 10:54:31 +00:00
drpatelh
67c231d05c
Change igenomes path
2019-12-18 10:54:23 +00:00
Harshil Patel
aadeea0ab9
Merge pull request #111 from drpatelh/master
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Update awsbatch.config
2019-12-12 14:32:59 +00:00
