//Profile config names for nf-core/configs params { config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs' config_profile_contact = 'Edmund Miller(@emiller88)' config_profile_url = 'http://docs.oithpc.utdallas.edu/' singularity_cache_dir = '/scratch/applied-genomics/singularity' } env { TMPDIR = '/home/$USER/scratch/tmp' } singularity { enabled = true envWhitelist='SINGULARITY_BINDPATH' autoMounts = true cacheDir = params.singularity_cache_dir } process { beforeScript = 'module load singularity/3.4.1' executor = 'slurm' queue = { task.memory >= 30.GB && task.cpu <= 16 ? 'normal': 'smallmem' } withLabel:process_high { cpus = { check_max( 16 * task.attempt, 'cpus' ) } memory = { check_max( 60.GB * task.attempt, 'memory' ) } time = { check_max( 16.h * task.attempt, 'time' ) } } } params { igenomes_base = '/scratch/applied-genomics/references/iGenomes/references/' max_memory = 90.GB max_cpus = 16 max_time = 96.h }