process { withName:APPLYBQSR { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:APPLYBQSR_SPARK { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_APPLYVQSR { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_BASERECALIBRATOR { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_BASERECALIBRATOR_SPARK { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_CALCULATECONTAMINATION { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_CNNSCOREVARIANTS { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_CREATESEQUENCEDICTIONARY { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_ESTIMATELIBRARYCOMPLEXITY { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_FILTERMUTECTCALLS { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_FILTERVARIANTTRANCHES { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_GATHERBQSRREPORTS { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_GATHERPILEUPSUMMARIES { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_GENOMICSDBIMPORT { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_GENOTYPEGVCFS { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_GETPILEUPSUMMARIES { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_HAPLOTYPECALLER { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_INTERVALLISTTOBED { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_LEARNREADORIENTATIONMODEL { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_MARKDUPLICATES { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_MARKDUPLICATES_SPARK { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_MERGEMUTECTSTATS { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_MERGEVCFS { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_MUTECT2 { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } withName:GATK4_VARIANTRECALIBRATOR { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } }