# nf-core/configs: MUNIN sarek specific configuration Extra specific configuration for sarek pipeline ## Usage To use, run the pipeline with `-profile munin`. This will download and launch the sarek specific [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Example: `nextflow run nf-core/sarek -profile munin` ## Sarek specific configurations for MUNIN Specific configurations for MUNIN has been made for sarek. * Params `annotation_cache` set to `true` * Path to `snpEff_cache`: `/data1/cache/snpEff/` * Path to `vep_cache`: `/data1/cache/VEP/` * Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz` * Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi` <<<<<<< HEAD * Load module `Sentieon` for Processes with `sentieon` labels ======= * Load module `Sentieon` for Processes with `sentieon` labels >>>>>>> 5dc5555... update docs