singularityDir = "/gpfs/scratch/${USER}/singularity_images_nextflow"

//Profile config names for nf-core/configs
params {
  config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
  config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
  config_profile_url = 'https://www.computerome.dk/'
}

singularity {
  enabled = true
  autoMounts = true
  cacheDir = singularityDir
}

process {
  beforeScript = 'module load singularity squashfs-tools'
  executor = 'pbs'
  queue = { task.memory >= 192.GB ? 'fatnode': 'thinnode'}
}

params {
  max_memory = 1500.GB
  max_cpus = 40
  max_time = 168.h
}