//Profile config names for nf-core/configs
params {
  config_profile_description = 'University of Cape Town HEX cluster config file provided by nf-core/configs.'
  config_profile_contact = 'Katie Lennard (@kviljoen)'
  config_profile_url = 'http://hpc.uct.ac.za/index.php/hex-3/'
}

singularity {
   enabled = true
   cacheDir = "/scratch/DB/bio/singularity-containers"
}

process {
   stageInMode = 'symlink'
   stageOutMode = 'rsync'
   queue = 'UCTlong'
   clusterOptions = { "-M $params.email -m abe -l nodes=1:ppn=1:series600" }
}

executor{
   executor = 'pbs'
   jobName = { "$task.tag" }
}