// Profile config names for nf-core/configs params { // Specific nf-core/configs params config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs' // Specific nf-core/sarek configs params max_memory = 752.GB max_cpus = 46 max_time = 72.h // Specific nf-core/sarek params annotation_cache = true pon = '/data1/PON/vcfs/BTB.PON.vcf.gz' pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi' snpEff_cache = '/data1/cache/snpEff/' vep_cache = '/data1/cache/VEP/' } // Specific nf-core/sarek process configuration process { withLabel:sentieon { beforeScript = {params.sentieon ? 'module load sentieon/201808.05' : ''} container = {params.sentieon ? '' : 'nfcore/sarek:dev'} } }