nf-configs/docs/pipeline/eager/crick.md

nf-core/configs: Crick eager specific configuration

Extra specific configuration for eager pipeline

Pipeline specific profiles

Specific-pipeline profiles exist for the following pipelines, and will be automatically loaded when supplying -profile crick to your command:

• eager

Usage

To use, run the pipeline with -profile crick.

This will download and launch the eager specific crick.config which is adapted to data generated at the Crick and processed on the Crick's HPC.

Example: nextflow run nf-core/eager -profile crick

screening

• Low coverage data.

production

• High coverage data.

external

• External higher coverage data.