You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
30 lines
975 B
Plaintext
30 lines
975 B
Plaintext
//Profile config names for nf-core/configs
|
|
params {
|
|
config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
|
|
config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
|
|
config_profile_url = 'https://www.computerome.dk/'
|
|
project = null
|
|
cache_dir = "/home/projects/$params.project/scratch"
|
|
schema_ignore_params = "project,cache_dir,genomes,modules"
|
|
|
|
//Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
|
|
max_memory = 1500.GB
|
|
max_cpus = 40
|
|
|
|
//There is no max walltime on the cluster, but a week seems sensible if not directly specified
|
|
max_time = 168.h
|
|
}
|
|
|
|
singularity {
|
|
enabled = true
|
|
autoMounts = true
|
|
cacheDir = params.cache_dir
|
|
}
|
|
|
|
process {
|
|
beforeScript = "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir"
|
|
executor = 'pbs'
|
|
queueSize = 2000
|
|
clusterOptions = "-A $params.project -W group_list=$params.project"
|
|
}
|