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53 lines
1.3 KiB
Plaintext
53 lines
1.3 KiB
Plaintext
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Generic MPI-EVA cluster(s) profile provided by nf-core/configs.'
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_url = 'https://eva.mpg.de'
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}
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// Preform work directory cleanup after a successful run
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cleanup = true
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singularity {
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enabled = true
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autoMounts = true
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}
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process {
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executor = 'sge'
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penv = 'smp'
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queue = 'all.q'
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clusterOptions = { "-S /bin/bash -V -j y -o output.sge -l h_vmem=${task.memory.toGiga()}G" }
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}
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executor {
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queueSize = 8
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}
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profiles {
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archgen {
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params {
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igenomes_base = "/projects1/public_data/igenomes/"
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config_profile_description = 'MPI-EVA archgen profile, provided by nf-core/configs.'
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max_memory = 256.GB
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max_cpus = 32
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max_time = 365.d
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//Illumina iGenomes reference file path
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}
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process {
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queue = { task.memory > 700.GB ? 'bigmem.q' : 'archgen.q' }
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clusterOptions = { "-S /bin/bash -V -j y -o output.sge -l h_vmem=${task.memory.toGiga()}G" }
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}
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singularity {
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cacheDir = "/mnt/archgen/tools/singularity/containers/"
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}
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}
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// Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
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debug {
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cleanup = false
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}
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}
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