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26 lines
772 B
Plaintext
26 lines
772 B
Plaintext
params {
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config_profile_description = 'The Jackson Laboratory Sumner HPC profile provided by nf-core/configs.'
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config_profile_contact = 'Bill Flynn (@flynnb)'
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config_profile_url = 'https://jacksonlaboratory.sharepoint.com/sites/ResearchIT/SitePages/Welcome-to-Sumner.aspx'
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singularity_cache_dir = '/fastscratch/singularity_cache_nfcore'
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}
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executor.$slurm.queueSize = 250
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process {
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executor = "slurm"
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queue = "compute"
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clusterOptions = {task.time < 72.h ? '-q batch' : '-q long'}
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module = "slurm"
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beforeScript = 'module load singularity'
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}
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singularity{
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enabled = true
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autoMounts = true
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cacheDir = params.singularity_cache_dir
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}
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params {
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max_memory = 320.GB
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max_cpus = 32
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max_time = 336.h
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}
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