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33 lines
873 B
Plaintext
33 lines
873 B
Plaintext
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'National University of Ireland, Galway Lugh cluster profile provided by nf-core/configs'
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config_profile_contact = 'Barry Digby (@BarryDigby)'
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config_profile_url = 'https://github.com/nf-core/configs/blob/master/docs/lugh.md'
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}
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singularity {
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enabled = true
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autoMounts = true
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cacheDir = '/data/containers'
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}
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process {
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beforeScript = """
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module load EasyBuild/3.4.1
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module load Java/1.8.0_144
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module load singularity/3.4.1
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ulimit -s unlimited
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"""
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.stripIndent()
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containerOptions = '-B /data/'
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executor = 'slurm'
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queue = { task.memory >= 64.GB || task.cpus > 16 ? 'highmem' : 'normal' }
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}
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params {
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max_time = 120.h
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max_memory = 128.GB
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max_cpus = 32
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}
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