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42 lines
1.0 KiB
Plaintext
42 lines
1.0 KiB
Plaintext
/*
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* -------------------------------------------------
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* HPC cluster config file
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* -------------------------------------------------
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* http://www.hpc.uct.ac.za/
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*/
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params {
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config_profile_description = 'University of Cape Town High Performance Cluster config file provided by nf-core/configs.'
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config_profile_contact = 'Katie Lennard (@kviljoen)'
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config_profile_url = 'http://hpc.uct.ac.za/index.php/hpc-cluster/'
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singularity_cache_dir = "/bb/DB/bio/singularity-containers/"
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igenomes_base = '/bb/DB/bio/rna-seq/references'
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max_memory = 384.GB
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max_cpus = 40
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max_time = 1000.h
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hpc_queue = 'ada'
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hpc_account = '--account cbio'
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genome = 'GRCh37'
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}
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singularity {
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enabled = true
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cacheDir = params.singularity_cache_dir
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autoMounts = true
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}
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process {
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executor = 'slurm'
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queue = params.hpc_queue
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// Increasing maxRetries, this will overwrite what we have in base.config
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maxRetries = 4
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clusterOptions = params.hpc_account
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stageInMode = 'symlink'
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stageOutMode = 'rsync'
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}
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executor {
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queueSize = 15
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}
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