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35 lines
939 B
Plaintext
35 lines
939 B
Plaintext
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs'
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config_profile_contact = 'Edmund Miller(@emiller88)'
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config_profile_url = 'http://docs.oithpc.utdallas.edu/'
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singularity_cache_dir = '/scratch/applied-genomics/singularity'
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}
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env {
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TMPDIR = '/home/$USER/scratch/tmp'
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}
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singularity {
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enabled = true
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envWhitelist='SINGULARITY_BINDPATH'
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autoMounts = true
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cacheDir = params.singularity_cache_dir
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}
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process {
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beforeScript = 'module load singularity/3.4.1'
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executor = 'slurm'
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queue = { task.memory >= 30.GB && task.cpu <= 16 ? 'normal': 'smallmem' }
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}
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// Preform work directory cleanup after a successful run
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cleanup = true
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params {
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// TODO Need to initialize this
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// igenomes_base = '/scratch/applied-genomics/references/iGenomes/references/'
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max_memory = 90.GB
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max_cpus = 16
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max_time = 96.h
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} |