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121 lines
3.3 KiB
Plaintext
121 lines
3.3 KiB
Plaintext
// Define the Scratch directory
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def scratch_dir = System.getenv("VSC_SCRATCH_VO_USER") ?: "scratch/"
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// Specify the work directory
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workDir = "$scratch_dir/work"
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// Perform work directory cleanup when the run has succesfully completed
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// cleanup = true
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// Reduce the job submit rate to about 30 per minute, this way the server won't be bombarded with jobs
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// Limit queueSize to keep job rate under control and avoid timeouts
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executor {
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submitRateLimit = '30/1min'
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queueSize = 50
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}
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// Add backoff strategy to catch cluster timeouts
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process {
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errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
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maxRetries = 5
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}
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// Specify that singularity should be used and where the cache dir will be for the images
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singularity {
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enabled = true
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autoMounts = true
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cacheDir = "$scratch_dir/singularity"
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}
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env {
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SINGULARITY_CACHEDIR="$scratch_dir/.singularity"
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}
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// Define profiles for each cluster
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profiles {
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skitty {
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params {
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config_profile_description = 'HPC_SKITTY profile for use on the Skitty cluster of the VSC HPC.'
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config_profile_contact = 'ict@cmgg.be'
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config_profile_url = 'https://www.ugent.be/hpc/en'
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max_memory = 177.GB
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max_cpus = 36
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max_time = 72.h
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}
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process {
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executor = 'slurm'
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queue = 'skitty'
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scratch = "$scratch_dir"
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}
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}
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swalot {
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params {
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config_profile_description = 'HPC_SWALOT profile for use on the Swalot cluster of the VSC HPC.'
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config_profile_contact = 'ict@cmgg.be'
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config_profile_url = 'https://www.ugent.be/hpc/en'
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max_memory = 116.GB
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max_cpus = 20
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max_time = 72.h
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}
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process {
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executor = 'slurm'
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queue = 'swalot'
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scratch = "$scratch_dir"
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}
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}
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victini {
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params {
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config_profile_description = 'HPC_VICTINI profile for use on the Victini cluster of the VSC HPC.'
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config_profile_contact = 'ict@cmgg.be'
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config_profile_url = 'https://www.ugent.be/hpc/en'
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max_memory = 88.GB
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max_cpus = 36
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max_time = 72.h
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}
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process {
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executor = 'slurm'
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queue = 'victini'
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scratch = "$scratch_dir"
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}
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}
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kirlia {
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params {
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config_profile_description = 'HPC_KIRLIA profile for use on the Kirlia cluster of the VSC HPC.'
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config_profile_contact = 'ict@cmgg.be'
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config_profile_url = 'https://www.ugent.be/hpc/en'
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max_memory = 738.GB
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max_cpus = 36
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max_time = 72.h
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}
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process {
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executor = 'slurm'
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queue = 'kirlia'
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scratch = "$scratch_dir"
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}
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}
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doduo {
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params {
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config_profile_description = 'HPC_DODUO profile for use on the Doduo cluster of the VSC HPC.'
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config_profile_contact = 'ict@cmgg.be'
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config_profile_url = 'https://www.ugent.be/hpc/en'
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max_memory = 250.GB
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max_cpus = 96
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max_time = 72.h
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}
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process {
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executor = 'slurm'
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queue = 'doduo'
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scratch = "$scratch_dir"
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}
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}
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}
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