millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-29 10:59:55 +00:00
Code Issues Releases Packages Activity
nf-configs/docs/pipeline/sarek/munin.md
Maxime Garcia b029ccaa59 Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config
2019-11-26 11:48:11 +01:00

806 B
Raw Blame History

nf-core/configs: MUNIN sarek specific configuration

Extra specific configuration for sarek pipeline

Usage

To use, run the pipeline with -profile munin.

This will download and launch the sarek specific munin.config which has been pre-configured with a setup suitable for the MUNIN cluster.

Example: nextflow run nf-core/sarek -profile munin

Sarek specific configurations for MUNIN

Specific configurations for MUNIN has been made for sarek.

  • Params annotation_cache set to true
  • Path to snpEff_cache: /data1/cache/snpEff/
  • Path to vep_cache: /data1/cache/VEP/
  • Path to pon: /data1/PON/vcfs/BTB.PON.vcf.gz
  • Path to pon_index: /data1/PON/vcfs/BTB.PON.vcf.gz.tbi
  • Load module Sentieon for Processes with sentieon labels