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24 lines
904 B
Text
24 lines
904 B
Text
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
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config_profile_url = 'https://www.computerome.dk/'
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project = null
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max_memory = 1500.GB #Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
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max_cpus = 40
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max_time = 168.h #There is no max walltime on the cluster, but a week seems sensible if not directly specified
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}
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singularity {
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enabled = true
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autoMounts = true
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cacheDir = { "/home/projects/$params.project/scratch" }
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}
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process {
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beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=/home/projects/$params.project/scratch" }
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executor = 'pbs'
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queueSize = 2000
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clusterOptions = { "-A $params.project -W group_list=$params.project" }
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}
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