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nf-configs/conf/alice.config
Bjørn Peare Bartholdy e750a6d445
Update conf/alice.config
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2021-09-28 13:34:12 +02:00

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params {
config_profile_name = 'ALICE'
config_profile_description = 'Profile for use on Academic Leiden Interdisciplinary Cluster Environment (ALICE).'
config_profile_contact = 'Bjorn Peare Bartholdy (@osteobjorn)'
config_profile_url = 'https://wiki.alice.universiteitleiden.nl/'
max_cpus = 24
max_memory = 240.GB
max_time = 168.h
}
process {
executor = 'slurm'
queue = { task.time < 3.h ? 'cpu-short' : task.time < 24.h ? 'cpu-medium' : 'cpu-long' }
}
singularity {
enabled = true
autoMounts = true
}
// Preform work directory cleanup after a successful run
cleanup = true
// Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
profiles {
mem {
params {
max_cpus = 24
max_memory = 2.TB
max_time = 336.h
}
process {
queue = 'mem'
}
}
debug {
cleanup = false
}
}