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https://github.com/MillironX/nf-configs.git
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0830203b70
Updating README and fixing linting errors in CCGA_MED profile Fixing order in profile queue and removed leading slash from readme for ccga profile docs Fixing order in profile queue and removed leading slash from readme for ccga profile docs
57 lines
3.2 KiB
Text
57 lines
3.2 KiB
Text
/*
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* -------------------------------------------------
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* nfcore custom profile Nextflow config file
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* -------------------------------------------------
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* Config options for all custom environments.
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* Cluster-specific config options should be saved
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* in the conf folder and imported under a profile
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* name here.
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*/
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params.custom_config_version = 'master'
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params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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profiles {
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
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cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" }
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ccga { includeConfig "${params.custom_config_base}/conf/ccga.config" }
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ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
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ccga_med { includeConfig "${params.custom_config_base}/conf/ccga_med.config" }
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cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" }
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crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
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czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
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czbiohub_aws_highpriority {
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includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config";
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includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config"}
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genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
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denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
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genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
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gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
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hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
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kraken { includeConfig "${params.custom_config_base}/conf/kraken.config" }
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munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
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pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
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phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
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prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
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shh { includeConfig "${params.custom_config_base}/conf/shh.config" }
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uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" }
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uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
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uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
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}
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// If user hostnames contain one of these substring and they are
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// not running the associated profile, it will trigger a warning message
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// Should be defined here for all profiles (not within profile config)
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params {
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// This is a groovy map, not a nextflow parameter set
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hostnames = [
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cbe: ['.cbe.vbc.ac.at'],
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crick: ['.thecrick.org'],
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genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
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genouest: ['.genouest.org'],
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uppmax: ['.uppmax.uu.se']
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]
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}
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