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nf-configs/conf/eva.config
James A. Fellows Yates ce465cca57
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Co-authored-by: Alexander Peltzer <apeltzer@users.noreply.github.com>
2021-04-07 19:27:24 +02:00

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//Profile config names for nf-core/configs
params {
config_profile_description = 'Generic MPI-EVA cluster(s) profile provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://eva.mpg.de'
}
// Preform work directory cleanup after a successful run
cleanup = true
singularity {
enabled = true
autoMounts = true
}
process {
executor = 'sge'
penv = 'smp'
queue = 'all.q'
}
executor {
queueSize = 8
}
profiles {
archgen {
params {
igenomes_base = "/projects1/public_data/igenomes/"
config_profile_description = 'MPI-EVA archgen profile, provided by nf-core/configs.'
max_memory = 256.GB
max_cpus = 32
max_time = 720.h
//Illumina iGenomes reference file path
}
process {
queue = 'archgen.q'
}
singularity {
cacheDir = "/mnt/archgen/users/singularity_scratch"
}
}
// Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
debug {
cleanup = false
}
}