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nf-configs/conf/pipeline/rnaseq/mpcdf.config
James A. Fellows Yates 17312604cf
Update mpcdf.config
2022-03-03 12:25:06 +01:00

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1.9 KiB
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// Profile config names for nf-core/configs
profiles {
cobra {
params {
// Specific nf-core/configs params
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_description = 'nf-core/rnaseq MPCDF cobra profile provided by nf-core/configs'
}
process {
cpus = { check_max( 1 * task.attempt, 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) }
errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' }
maxRetries = 1
maxErrors = '-1'
// Process-specific resource requirements
withLabel:process_low {
cpus = { check_max( 2 * task.attempt, 'cpus' ) }
memory = { check_max( 12.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) }
}
withLabel:process_medium {
cpus = 40
memory = { check_max( 36.GB * task.attempt, 'memory' ) }
time = { check_max( 6.h * task.attempt, 'time' ) }
}
withLabel:process_high {
cpus = 40
memory = { check_max( 72.GB * task.attempt, 'memory' ) }
time = { check_max( 10.h * task.attempt, 'time' ) }
}
withLabel:process_long {
time = 24.h
}
withLabel:process_high_memory {
cpus = 40
memory = { check_max( 200.GB * task.attempt, 'memory' ) }
}
withLabel:error_ignore {
errorStrategy = 'ignore'
}
withName:CUSTOM_DUMPSOFTWAREVERSIONS {
cache = false
}
}
}
}