mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-23 16:49:55 +00:00
21 lines
860 B
Markdown
21 lines
860 B
Markdown
# nf-core/configs: Imperial scflow Specific Configuration
|
|
|
|
Extra specific configuration for the scflow pipeline
|
|
|
|
## Usage
|
|
|
|
To use, run the pipeline with `-profile imperial` or `-profile imperial_mb`.
|
|
|
|
This will download and launch the scflow specific [`imperial.config`](../../../conf/pipeline/scflow/imperial.config) which has been pre-configured with a setup suitable for the Imperial HPC cluster.
|
|
|
|
Example: `nextflow run nf-core/scflow -profile imperial`
|
|
|
|
## scflow specific configurations for Imperial
|
|
|
|
Specific configurations for Imperial have been made for scflow.
|
|
|
|
- Singularity `enabled` and `autoMounts` set to `true`
|
|
- Singularity `cacheDir` path set to an RDS location
|
|
- Singularity `runOptions` path set to bind (`-B`) RDS paths with container paths.
|
|
- Params `ctd_folder` set to an RDS location.
|
|
- Parms `ensembl_mappings` set to an RDS location.
|