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46 lines
1.2 KiB
Text
46 lines
1.2 KiB
Text
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Cluster profile for medair (local cluster of Clinical Genomics Gothenburg)'
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config_profile_contact = 'Clinical Genomics, Gothenburg'
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config_profile_url = 'https://www.scilifelab.se/units/clinical-genomics-goteborg/'
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}
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//Nextflow parameters
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singularity {
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enabled = true
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cacheDir = "/apps/bio/dependencies/nf-core/singularities"
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}
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profiles {
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wgs {
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process {
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queue = 'wgs.q'
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executor = 'sge'
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penv = 'mpi'
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process.clusterOptions = '-l excl=1'
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params.max_cpus = 40
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params.max_time = 48.h
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params.max_memory = 128.GB
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}
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}
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production {
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process {
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queue = 'production.q'
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executor = 'sge'
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penv = 'mpi'
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process.clusterOptions = '-l excl=1'
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params.max_cpus = 40
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params.max_time = 480.h
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params.max_memory = 128.GB
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}
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}
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}
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//Specific parameter for pipelines that can use Sentieon (e.g. nf-core/sarek, nf-core/raredisease)
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process {
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withLabel:'sentieon' {
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container = "/apps/bio/singularities/sentieon-211204-peta.simg"
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}
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}
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