mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-24 09:09:56 +00:00
52 lines
1.3 KiB
Text
52 lines
1.3 KiB
Text
//Profile config names for nf-core/configs
|
|
params {
|
|
config_profile_description = 'Generic MPI-EVA cluster(s) profile provided by nf-core/configs.'
|
|
config_profile_contact = 'James Fellows Yates (@jfy133)'
|
|
config_profile_url = 'https://eva.mpg.de'
|
|
}
|
|
|
|
// Preform work directory cleanup after a successful run
|
|
cleanup = true
|
|
|
|
singularity {
|
|
enabled = true
|
|
autoMounts = true
|
|
}
|
|
|
|
process {
|
|
executor = 'sge'
|
|
penv = 'smp'
|
|
queue = 'all.q'
|
|
clusterOptions = { "-S /bin/bash -V -j y -o output.sge -l h_vmem=${task.memory.toGiga()}G" }
|
|
}
|
|
|
|
executor {
|
|
queueSize = 8
|
|
}
|
|
|
|
profiles {
|
|
archgen {
|
|
params {
|
|
igenomes_base = "/projects1/public_data/igenomes/"
|
|
config_profile_description = 'MPI-EVA archgen profile, provided by nf-core/configs.'
|
|
max_memory = 256.GB
|
|
max_cpus = 32
|
|
max_time = 365.d
|
|
//Illumina iGenomes reference file path
|
|
}
|
|
|
|
process {
|
|
queue = { task.memory > 700.GB ? 'bigmem.q' : 'archgen.q' }
|
|
clusterOptions = { "-S /bin/bash -V -j y -o output.sge -l h_vmem=${task.memory.toGiga()}G" }
|
|
}
|
|
|
|
singularity {
|
|
cacheDir = "/mnt/archgen/tools/singularity/containers/"
|
|
}
|
|
|
|
}
|
|
// Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
|
|
debug {
|
|
cleanup = false
|
|
}
|
|
}
|