mirror of
https://github.com/MillironX/nf-configs.git
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60ae267e43
this seems to be more reliable for queue checking than using the clusterOptions directive. See https://github.com/nextflow-io/nextflow/issues/807
27 lines
784 B
Text
Executable file
27 lines
784 B
Text
Executable file
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'BioHPC Genomics (biohpc_gen) cluster profile provided by nf-core/configs'
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config_profile_contact = 'Patrick Hüther (@phue)'
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config_profile_url = 'https://collab.lmu.de/display/BioHPCGenomics/BioHPC+Genomics'
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}
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env {
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SLURM_CLUSTERS='biohpc_gen'
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}
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process {
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executor = 'slurm'
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queue = { task.memory <= 1536.GB ? (task.time > 2.d || task.memory > 384.GB ? 'biohpc_gen_production' : 'biohpc_gen_normal') : 'biohpc_gen_highmem' }
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beforeScript = 'module use /dss/dssfs01/pr53da/pr53da-dss-0000/spack/modules/x86_avx2/linux*'
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module = 'charliecloud/0.22:miniconda3'
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}
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charliecloud {
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enabled = true
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}
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params {
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params.max_time = 14.d
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params.max_cpus = 80
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params.max_memory = 3.TB
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}
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