mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-14 21:53:09 +00:00
7346bffdc8
Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.
30 lines
805 B
Text
30 lines
805 B
Text
//Profile config names for nf-core/configs
|
|
params {
|
|
config_profile_description = 'BINAC cluster profile provided by nf-core/configs.'
|
|
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
|
|
config_profile_url = 'https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC'
|
|
}
|
|
|
|
singularity {
|
|
enabled = true
|
|
envWhitelist = 'TZ'
|
|
}
|
|
|
|
process {
|
|
beforeScript = 'module load devel/singularity/3.4.2'
|
|
executor = 'pbs'
|
|
queue = 'short'
|
|
process.queue = { task.memory >= 128.GB ? 'smp': task.time <= 20.m ? 'tiny' : task.time <= 48.h ? 'short' : task.time <= 168.h ? 'short' : 'long'}
|
|
}
|
|
|
|
params {
|
|
igenomes_base = '/nfsmounts/igenomes'
|
|
max_memory = 1000.GB
|
|
max_cpus = 28
|
|
max_time = 48.h
|
|
}
|
|
|
|
weblog{
|
|
enabled = true
|
|
url = 'https://services.qbic.uni-tuebingen.de/flowstore/workflows'
|
|
}
|