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11 lines
697 B
Markdown
11 lines
697 B
Markdown
# nf-core/configs: ATAC-Seq Specific Configuration - Sheffield Bioinformatics Core Facility ShARC
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Specific configuration for [nf-co.re/atacseq](https://nf-co.re/atacseq) pipeline
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## Usage
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To use, run nextflow with the pipeline using `-profile sbc_sharc` (note the single hyphen).
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This will download and launch the atacseq specific [`sbc_sharc.config`](../../../conf/pipeline/atacseq/sbc_sharc.config) which has been pre-configured with a setup suitable for the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html) and will automatically load the appropriate pipeline-specific configuration file.
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Example: `nextflow run nf-core/atacseq -profile sbc_sharc`
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