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54 lines
1.4 KiB
Text
54 lines
1.4 KiB
Text
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Generic MPI-SHH cluster(s) profile provided by nf-core/configs.'
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config_profile_contact = 'James Fellows Yates (@jfy133), Maxime Borry (@Maxibor)'
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config_profile_url = 'https://shh.mpg.de'
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max_memory = 256.GB
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max_cpus = 32
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max_time = 720.h
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//Illumina iGenomes reference file path
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igenomes_base = "/projects1/public_data/igenomes/"
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}
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// Preform work directory cleanup after a successful run
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cleanup = true
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singularity {
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enabled = true
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autoMounts = true
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cacheDir = "/projects1/singularity_scratch/cache/"
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}
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process {
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executor = 'slurm'
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}
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executor {
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queueSize = 8
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}
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profiles {
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cdag {
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params {
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config_profile_description = 'CDAG MPI-SHH profile, provided by nf-core/configs.'
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}
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// delete when CDAG will be fixed
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process {
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queue = 'long'
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}
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}
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sdag {
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params {
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config_profile_description = 'SDAG MPI-SHH profile, provided by nf-core/configs.'
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max_memory = 2.TB
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max_cpus = 128
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}
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process {
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queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
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}
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}
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// Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
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debug {
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cleanup = false
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}
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}
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