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34 lines
1 KiB
Text
34 lines
1 KiB
Text
params {
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config_profile_description = 'South Australian Health and Medical Research Institute (SAHMRI) HPC cluster profile.'
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config_profile_contact = 'Nathan Watson-Haigh (nathan.watson-haigh@sahmri.com)'
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config_profile_url = "https://sahmri.org.au"
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max_memory = 375.GB
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max_cpus = 32
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max_time = 14.d
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igenomes_base = '/cancer/storage/shared/igenomes/references/'
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}
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process {
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executor = 'slurm'
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queue = 'sahmri_prod_hpc,sahmri_cancer_hpc'
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maxRetries = 2
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cpus = { check_max( 2 * task.attempt, 'cpus') }
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memory = { check_max( 1.GB * task.attempt, 'memory') }
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time = { check_max( 10.m * task.attempt, 'time') }
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}
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executor {
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queueSize = 50
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submitRateLimit = '10 sec'
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}
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singularity {
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enabled = true
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autoMounts = true
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beforeScript = 'export PATH=/apps/opt/singularity/latest/bin:${PATH}'
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cacheDir = '/cancer/storage/shared/simg'
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}
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cleanup = true
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profiles {
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debug {
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cleanup = false
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}
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}
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