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39 lines
1 KiB
Text
39 lines
1 KiB
Text
/*
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* -------------------------------------------------
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* Nextflow nf-core config file for ICR davros HPC
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* -------------------------------------------------
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* Defines LSF process executor and singularity
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* settings.
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*
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*/
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params {
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config_profile_description = "Nextflow nf-core profile for ICR davros HPC"
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config_profile_contact = "Adrian Larkeryd (@adrlar)"
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}
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singularity {
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enabled = true
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runOptions = "--bind /mnt:/mnt --bind /data:/data"
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// autoMounts = true // autoMounts sometimes causes a rare bug with the installed version of singularity
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}
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executor {
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// This is set because of an issue with too many
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// singularity containers launching at once, they
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// cause an singularity error with exit code 255.
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submitRateLimit = "2 sec"
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}
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process {
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executor = "LSF"
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}
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params {
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// LSF cluster set up with memory tied to cores,
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// it can't be requested. Locked at 12G per core.
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cpus = 10
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max_cpus = 20
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max_memory = 12.GB
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max_time = 168.h
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igenomes_base = "/mnt/scratch/readonly/igenomes"
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}
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