mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-14 13:43:09 +00:00
36 lines
874 B
Text
36 lines
874 B
Text
params {
|
|
config_profile_description = 'The Wellcome Sanger Institute HPC cluster profile'
|
|
config_profile_contact = 'Anthony Underwood (@aunderwo)'
|
|
config_profile_url = 'https://www.sanger.ac.uk/group/informatics-support-group/'
|
|
}
|
|
|
|
singularity {
|
|
enabled = true
|
|
cacheDir = "${baseDir}/singularity"
|
|
runOptions = '--bind /lustre --bind /nfs/pathnfs01 --bind /nfs/pathnfs02 --bind /nfs/pathnfs03 --bind /nfs/pathnfs04 --bind /nfs/pathnfs05 --bind /nfs/pathnfs06 --no-home'
|
|
}
|
|
|
|
process{
|
|
executor = 'lsf'
|
|
queue = 'normal'
|
|
errorStrategy = { task.attempt <= 5 ? "retry" : "finish" }
|
|
process.maxRetries = 5
|
|
withLabel:process_long {
|
|
queue = 'long'
|
|
max_time = 48.h
|
|
}
|
|
}
|
|
|
|
executor{
|
|
name = 'lsf'
|
|
perJobMemLimit = true
|
|
poolSize = 4
|
|
submitRateLimit = '5 sec'
|
|
killBatchSize = 50
|
|
}
|
|
|
|
params {
|
|
max_memory = 128.GB
|
|
max_cpus = 64
|
|
max_time = 12.h
|
|
}
|