mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-11 04:23:10 +00:00
33 lines
917 B
Text
33 lines
917 B
Text
// Define the Scratch directory
|
|
def scratch_dir = System.getenv("USER_SCRATCH") ?: "/tmp"
|
|
|
|
params {
|
|
config_profile_name = 'cheaha'
|
|
config_profile_description = 'University of Alabama at Birmingham Cheaha HPC'
|
|
config_profile_contact = 'Lara Ianov (lianov@uab.edu) or Austyn Trull (atrull@uab.edu)'
|
|
config_profile_url = 'https://www.uab.edu/cores/ircp/bds'
|
|
}
|
|
|
|
env {
|
|
TMPDIR="$USER"
|
|
SINGULARITY_TMPDIR="$scratch_dir"
|
|
}
|
|
|
|
singularity {
|
|
enabled = true
|
|
autoMounts = true
|
|
runOptions = "--contain --workdir $scratch_dir"
|
|
}
|
|
|
|
process {
|
|
executor = 'slurm'
|
|
queue = { task.memory <= 50.GB ? (task.time <= 2.h ? 'express' : task.time <= 12.h ? 'short' : task.time <= 50.h ? 'medium' : 'long') : (task.time <= 50.h ? 'largemem' : 'largemem-long')}
|
|
maxRetries = 3
|
|
beforeScript = 'module load Singularity'
|
|
}
|
|
|
|
params {
|
|
max_memory = 750.GB
|
|
max_cpus = 128
|
|
max_time = 150.h
|
|
}
|