mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-10 20:13:09 +00:00
47 lines
1.1 KiB
Text
47 lines
1.1 KiB
Text
//Profile config names for nf-core/configs
|
|
params {
|
|
config_profile_description = 'Generic MPI-SHH cluster(s) profile provided by nf-core/configs.'
|
|
config_profile_contact = 'James Fellows Yates (@jfy133), Maxime Borry (@Maxibor)'
|
|
config_profile_url = 'https://shh.mpg.de'
|
|
}
|
|
|
|
cleanup = true
|
|
|
|
singularity {
|
|
enabled = true
|
|
autoMounts = true
|
|
runOptions = '-B /run/shm:/run/shm'
|
|
cacheDir = "/projects1/singularity_scratch/cache/"
|
|
}
|
|
|
|
process {
|
|
executor = 'slurm'
|
|
queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
|
|
}
|
|
|
|
executor {
|
|
queueSize = 16
|
|
}
|
|
|
|
params {
|
|
max_memory = 256.GB
|
|
max_cpus = 32
|
|
max_time = 720.h
|
|
//Illumina iGenomes reference file path
|
|
igenomes_base = "/projects1/public_data/igenomes/"
|
|
}
|
|
|
|
profiles {
|
|
cdag {
|
|
params {
|
|
config_profile_description = 'MPI-SHH CDAG profile, provided by nf-core/configs.'
|
|
}
|
|
}
|
|
sdag {
|
|
params {
|
|
config_profile_description = 'MPI-SHH SDAG profile, provided by nf-core/configs.'
|
|
max_memory = 2.TB
|
|
max_cpus = 128
|
|
}
|
|
}
|
|
}
|