mirror of
https://github.com/MillironX/nf-configs.git
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53ab5ee34f
A local module file has been created to run the latest version of Sentieon. Doing this change, as the new version of Sentieon has only a dependency library update, hence it should not break the Sentieon pipeline. Tested locally with a test.conf having the new process block.
29 lines
1.1 KiB
Text
29 lines
1.1 KiB
Text
// sarek/munin specific profile config
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'Maxime Garcia (@maxulysse)'
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config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
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config_profile_url = 'https://ki.se/forskning/barntumorbanken'
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// Specific nf-core/sarek params
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annotation_cache = true
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cadd_cache = true
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cadd_indels = '/data1/cache/CADD/v1.4/InDels.tsv.gz'
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cadd_indels_tbi = '/data1/cache/CADD/v1.4/InDels.tsv.gz.tbi'
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cadd_wg_snvs = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz'
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cadd_wg_snvs_tbi = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz.tbi'
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pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
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pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
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snpeff_cache = '/data1/cache/snpEff/'
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vep_cache = '/data1/cache/VEP/'
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vep_cache_version = '95'
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}
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// Specific nf-core/sarek process configuration
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process {
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withLabel:sentieon {
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module = {params.sentieon ? 'sentieon/202112.00' : null}
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container = {params.sentieon ? null : container}
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}
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}
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